[Bioperl-l] Bio::SearchIO::Writer::HSPTableWriter arguments

[Jason Stajich]

use evalue instead of expect with GenericHSP - we'll have to fix the docs
and/or make some method aliases.  Steve and I did not synch the method
names between our implementations very well.

On Tue, 18 Mar 2003, Remo Sanges wrote:

> In Bio::SearchIO::Writer::HSPTableWriter module are implemented some
> arguments regarding the Hits, but if I use these I have an EXCEPTION.
> Infact module search the methods in Bio::Search::HSP::GenericHSP.
>
> here is the exception whit v 1.2.1-rc1
>
> ------------- EXCEPTION  -------------
> MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't
> locate object method "expect" via package "Bio::Search::HSP::GenericHSP"
> at (eval 6) line 1, <GEN1> line 137.
>
>
>
> STACK Bio::SearchIO::Writer::ResultTableWriter::__ANON__
> /root/Desktop/bioperl/bioperl-1.2.1-rc1/Bio/SearchIO/Writer/ResultTableWriter.pm:329
> STACK Bio::SearchIO::Writer::HSPTableWriter::to_string
> /root/Desktop/bioperl/bioperl-1.2.1-rc1/Bio/SearchIO/Writer/HSPTableWriter.pm:251
> STACK Bio::SearchIO::write_result
> /root/Desktop/bioperl/bioperl-1.2.1-rc1/Bio/SearchIO.pm:324
> STACK Bio::SearchIO::blast::write_result
> /root/Desktop/bioperl/bioperl-1.2.1-rc1/Bio/SearchIO/blast.pm:887
> STACK toplevel /root/Desktop/BlastTable3:50
>
> --------------------------------------
>
> Thanks
>
>
> Remo Sanges
> BioGeM - IGB
> Naples
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu