[Bioperl-l] Bio:Tools::Primer3, Bio::Seq::PrimedSeq, and Bio::SeqFeature::Primer

[Rob Edwards]

Hi all,

I have split Primer3 into Bio::Tools::Primer3 to parse Primer3 output and 
Bio::Tools::Run::Primer3 to run primer3, including adding the in OK_FIELD and 
AUTOLOAD methods as suggested by others.

Is there a way in Bio::Tools::Run::WrapperBase or Bio::Root::IO (or 
elsewhere?) to deal with creating a filehandle to print results out to? I 
couldn't find either a method or another implementation that has done this.

Also, I added a Bio::Tools::ePCR module that will return a Bio::Seq object 
when given a template and two sequences to act as primers. (I am not sure 
about the name at the moment, and am happy to change it as NCBI has an ePCR 
program that doesn't do anything like this).

http://www.salmonella.org/bioperl/primer3_v0.2.tgz

I'd appreciate any feedback.

Rob