[Bioperl-l] Extracting domain# from hmmpfam output

Diane Benz (CCGB) diane at mail.ahc.umn.edu
Mon Mar 17 11:31:45 EST 2003


Hello,
Is there a method in GenericHSP or HMMERHSP to retrieve the domain
number from hmmpfam output. I haven't been able to locate a method, but
I would like to extract the number after the word "domain" (in this case
"2") in the following output:

SH2_5: domain 2 of 2, from 349 to 432: score 104.4, E = 1.9e-26
Thanks, Diane Benz




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