[Bioperl-l] parsing blast result: how to get query info?

[Jack Chen]

Hi James,

Thank you for the reply and Jason for the informative page. I am
wondering if the page is incorporated into some of the modules, so that it
can be accessed using perldoc. Currently, there is no obvious way for me
to know what methods are associated with a certain object. 

Jack

-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-
 Jack Chen, Stein Laboratory  
 Cold Spring Harbor Laboratory 
 1 Bungtown Road               
 Cold Spring Harbor, NY, 11724  
 Tel: 1 516 367 8394              
-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-

On Tue, 4 Mar 2003, James Wasmuth wrote:

> Check the HOWTOs, http://www.bioperl.org/HOWTOs/html/SearchIO.html
> 
> 
> 
> 
> 
> Quoting Jack Chen <chenn at cshl.edu>:
> 
> > Hi All,
> > 
> > I have been unable to figure out how to retrive query sequence info.
> > For
> > example, when I use sequence A (in fasta format) to blast a database DB
> > and get a blast file FH with a number of hits, how can I retrieve
> > information for sequence A in my blast report, together with data for
> > the
> > hits? Sequence A could be one of a number of query sequences. 
> > 
> > Thanks,
> > 
> > Jack
> > -~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-
> >  Jack Chen, Stein Laboratory  
> >  Cold Spring Harbor Laboratory 
> >  1 Bungtown Road               
> >  Cold Spring Harbor, NY, 11724  
> >  Tel: 1 516 367 8394              
> > -~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-
> > 
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at bioperl.org
> > http://bioperl.org/mailman/listinfo/bioperl-l
> > 
> 
> 
> 
> 
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