[Bioperl-l] parsing blast result: how to get query info?

Jack Chen chenn at cshl.edu
Tue Mar 4 01:08:32 EST 2003


Hi All,

I have been unable to figure out how to retrive query sequence info. For
example, when I use sequence A (in fasta format) to blast a database DB
and get a blast file FH with a number of hits, how can I retrieve
information for sequence A in my blast report, together with data for the
hits? Sequence A could be one of a number of query sequences. 

Thanks,

Jack
-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-
 Jack Chen, Stein Laboratory  
 Cold Spring Harbor Laboratory 
 1 Bungtown Road               
 Cold Spring Harbor, NY, 11724  
 Tel: 1 516 367 8394              
-~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-



More information about the Bioperl-l mailing list