[Bioperl-l] BioFetch_DB.t fails 4 tests

[Aaron J Mackey]

I've got a fix for the fasta.pm parser to ignore leading whitespace before
the first entry ... just running all the tests now to make sure it's good.

-Aaron

On 10 Mar 2003, Heikki Lehvaslaiho wrote:

> Only one test fails now for me:
>
> not ok 18
> # Test 18 got: '0' (t/BioFetch_DB.t at line 92)
> #    Expected: '103'
>
> This is caused by asking sequence in fasta format from swall database.
> Setting verbose to 2 gives:
>
> request is POST http://www.ebi.ac.uk/cgi-bin/dbfetch
> Content-Length: 43
> Content-Type: application/x-www-form-urlencoded
>
> db=swall&id=P43780&format=fasta&style=raw
>
> Which pasted into browser as:
>
> http://www.ebi.ac.uk/cgi-bin/dbfetch?db=swall&id=P43780&format=fasta&style=raw
>
> retieves the enry ok.
>
>
> Retrieving anything in fasta format using BioFetch is now broken, but I
> can not figure out where the error comes from. Anyone?
>
> 	-Heikki
>
>
> On Fri, 2003-03-07 at 02:11, Hilmar Lapp wrote:
> > not ok 18
> > # Test 18 got: '0' (t/BioFetch_DB.t at line 92)
> > #    Expected: '103'
> > ok 19
> > not ok 20
> > # Test 20 got: '0' (t/BioFetch_DB.t at line 115)
> > #    Expected: '408'
> > not ok 21
> > # Test 21 got: '408' (t/BioFetch_DB.t at line 116)
> > #    Expected: '1611'
> > not ok 22
> > # Test 22 got: '1611' (t/BioFetch_DB.t at line 117)
> > #    Expected: '200'
> >
> > All others are ok.
>

-- 
 Aaron J Mackey
 Pearson Laboratory
 University of Virginia
 (434) 924-2821
 amackey at virginia.edu