[Bioperl-l] Bio::Tools::Run::Genewise and HMMs

[Jason Stajich]

Sounds good.

On Wed, 5 Mar 2003, Keith James wrote:

>
> Hi,
>
> The HMM functionality of this module is quite well hidden. I have made
> it more explicit that it will accept a combination of profile HMM +
> genomic sequence file / Bio::SeqI in addition to the documented
> params. It now throws an exception if the hmmer switch is on and the
> first argument is a Bio::SeqI.
>
> I also clarified the docs a bit e.g. where it describes all the
> supported genewise params as starting with a '-', only to have the
> constructor silently discard anything of that form.
>
> If there are no objections I'll check in the changes. They are fairly
> minor (tests pass).
>
> Keith
>
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu