[Bioperl-l] parsing blast result: how to get query info?

[James Wasmuth]

Check the HOWTOs, http://www.bioperl.org/HOWTOs/html/SearchIO.html





Quoting Jack Chen <chenn at cshl.edu>:

> Hi All,
> 
> I have been unable to figure out how to retrive query sequence info.
> For
> example, when I use sequence A (in fasta format) to blast a database DB
> and get a blast file FH with a number of hits, how can I retrieve
> information for sequence A in my blast report, together with data for
> the
> hits? Sequence A could be one of a number of query sequences. 
> 
> Thanks,
> 
> Jack
> -~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-
>  Jack Chen, Stein Laboratory  
>  Cold Spring Harbor Laboratory 
>  1 Bungtown Road               
>  Cold Spring Harbor, NY, 11724  
>  Tel: 1 516 367 8394              
> -~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-
> 
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