[Bioperl-l] RE: [Bioperl-guts-l] bioperl commit

[Jason Stajich]

Let's disable the taxonomy tests by default until we can get some
clarification from NCBI about the future of this interface.  The local
copy of the taxonomy db is in fact the real direction we want to go
anyways.

-jason

On Thu, 13 Mar 2003, Brian Osborne wrote:

> Aaron,
>
> If Makefile.PL says "makedoc.PL => ['biodesign.pod']" I find that most of
> the time makedoc is not executed, even if I'm doing something like 'make
> realclean; make;' (just confirmed this with "make clean") . Cygwin bug? We
> should go with the expected behaviour, shouldn't execute 'makedoc' each time
> just for me.
>
> "makedoc.PL => ['biodesign']" gets makedoc executed each "make", including
> "make install", can't tell you about "make test", that gets stuck on
> 't/Taxonomy'.
>
> Brian O.
>
> -----Original Message-----
> From: Aaron J Mackey [mailto:ajm6q at virginia.edu]
> Sent: Thursday, March 13, 2003 10:31 AM
> To: Brian Osborne
> Cc: Bioperl
> Subject: Re: [Bioperl-guts-l] bioperl commit
>
>
> On Thu, 13 Mar 2003, Brian Osborne wrote:
>
> > Add *pod's as values to makedoc key. Note that one says 'biodesign',
> > not 'biodesign.pod'. If the complete name is used then make checks for
> > the existence of the target and, if found, does not always execute
> > makedoc. Trick make by not using complete name.
>
> Hmm; it should execute if the Makefile has a newer date than the
> biodesign.pod file (which you'd expect if the Makefile has just been
> rebuilt via perl Makefile.PL).  Otherwise, won't make always try to build
> the non-existent "biodesign" at every command (make, make test, make
> install)?
>
> -Aaron
>
>
> > bioperl-live Makefile.PL,1.56,1.57
> > ===================================================================
> > RCS file: /home/repository/bioperl/bioperl-live/Makefile.PL,v
> > retrieving revision 1.56
> > retrieving revision 1.57
> > diff -u -r1.56 -r1.57
> > --- /home/repository/bioperl/bioperl-live/Makefile.PL 2003/03/12 11:28:32
> 1.56
> > +++ /home/repository/bioperl/bioperl-live/Makefile.PL 2003/03/13 10:07:05
> 1.57
> > @@ -253,7 +253,7 @@
> >      ) : (),
> >      'realclean' => {  FILES        => join(' ', at BACKUP_FILES) },
> >      DIR         => [  ], # directories with other Makefile.PL's in them
> > -    PL_FILES => { 'doc/makedoc.PL' => 'makedoc' }
> > +    PL_FILES => { 'doc/makedoc.PL' =>
> ['bioscripts','biodatabases','biodesign','bioperl'] }
> >  );
> >
> >
> >
> > _______________________________________________
> > Bioperl-guts-l mailing list
> > Bioperl-guts-l at bioperl.org
> > http://bioperl.org/mailman/listinfo/bioperl-guts-l
> >
>
> --
>  Aaron J Mackey
>  Pearson Laboratory
>  University of Virginia
>  (434) 924-2821
>  amackey at virginia.edu
>
>
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu