[Bioperl-l] parsing blast result: how to get query info?

[Prachi Shah]

Hi Jack,

Bio::SearchIO will do the job.
query_name
query_accession
query_length
query_description

are all available via this module.

Prachi.

--- Jack Chen <chenn at cshl.edu> wrote:
> Hi All,
> 
> I have been unable to figure out how to retrive
> query sequence info. For
> example, when I use sequence A (in fasta format) to
> blast a database DB
> and get a blast file FH with a number of hits, how
> can I retrieve
> information for sequence A in my blast report,
> together with data for the
> hits? Sequence A could be one of a number of query
> sequences. 
> 
> Thanks,
> 
> Jack
> -~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-
>  Jack Chen, Stein Laboratory  
>  Cold Spring Harbor Laboratory 
>  1 Bungtown Road               
>  Cold Spring Harbor, NY, 11724  
>  Tel: 1 516 367 8394              
> -~-~-~-~-~-~-~-~-~-~-~-~-~-~-~-
> 
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