[Bioperl-l] Different versions of biosql schema and bioperl-db

[Zayed Albertyn]

Hi

I am trying use the biosql schema to create a sequence database but it
doesnt seem to be working. The problem is with loading a set of sequences
into a database.

I am working with the bioperl 1.0.2 and the biosql schema (downloaded 14th
March). There seems to be some kind of incompatibilities between the
load_seqdatabase.pl script and the mysql table because I get the following
error message:  My sequences are all in Genbank format and I have checked
that bioperl-db is installed.

DBD::mysql::st execute failed: Unknown column 'display_id' in 'field list'
at /usr/lib/perl5/site_perl/5.6.1/Bio/DB/SQL/SeqAdaptor.pm line 427,
<GEN0> line 169.
DBD::mysql::st execute failed: Unknown column 'display_id' in 'field list'
at /usr/lib/perl5/site_perl/5.6.1/Bio/DB/SQL/SeqAdaptor.pm line 427,
<GEN0> line 169.


Please help.
Thanks
Zayed

-----------------------------------------------
From: Zayed Albertyn
Electric Genetics PTY Ltd
Tel: +27 21 959 3645; Mobile: +2782 480 6097
www.egenetics.com