[Bioperl-l] bioperl-db & biperl version

dugas at mediagen.fr dugas at mediagen.fr
Thu Mar 27 14:58:56 EST 2003


Dear all,

After few hours of testing differents versions of bioperl & bioperl-db
the only one wich seems to work is bioperl-db release-0-01 with bioperl 
release-0-7-2 (just a few problem : the field taxa.ncbi_taxa_id keep 
empty).
My test consiste is just launching load_seqdatabase.pl with gbest99.

But this couple use the "old" biosql-schema i.e. basicseqdb-mysql.sql
wich come from bioperl-db and was removed from cvs instead of the last
 one from biosql module.

So is there a new version wich run with the last biosql schema ?

Regards.


--

Olivier DUGAS
Bioinformatics Manager

Mediagen SAS



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