[Bioperl-l] Bio::SearchIO::Writer::HSPTableWriter arguments
Remo Sanges
sanges at biogem.it
Tue Mar 18 21:57:48 EST 2003
In Bio::SearchIO::Writer::HSPTableWriter module are implemented some
arguments regarding the Hits, but if I use these I have an EXCEPTION.
Infact module search the methods in Bio::Search::HSP::GenericHSP.
here is the exception whit v 1.2.1-rc1
------------- EXCEPTION -------------
MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't
locate object method "expect" via package "Bio::Search::HSP::GenericHSP"
at (eval 6) line 1, <GEN1> line 137.
STACK Bio::SearchIO::Writer::ResultTableWriter::__ANON__
/root/Desktop/bioperl/bioperl-1.2.1-rc1/Bio/SearchIO/Writer/ResultTableWriter.pm:329
STACK Bio::SearchIO::Writer::HSPTableWriter::to_string
/root/Desktop/bioperl/bioperl-1.2.1-rc1/Bio/SearchIO/Writer/HSPTableWriter.pm:251
STACK Bio::SearchIO::write_result
/root/Desktop/bioperl/bioperl-1.2.1-rc1/Bio/SearchIO.pm:324
STACK Bio::SearchIO::blast::write_result
/root/Desktop/bioperl/bioperl-1.2.1-rc1/Bio/SearchIO/blast.pm:887
STACK toplevel /root/Desktop/BlastTable3:50
--------------------------------------
Thanks
Remo Sanges
BioGeM - IGB
Naples
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