[Bioperl-l] bioperl-db works against the biosql HEAD
Hilmar Lapp
hlapp at gnf.org
Tue Mar 18 19:40:29 EST 2003
I just committed fixes to bioperl-db that adapt the PostgreSQL driver
modules to the latest revision of the biosql-schema (which is quite
close to freeze point, some cosmetic changes may be still coming
though). I adapted the MySQL-specific driver modules yesterday already.
Both pass all tests on my test box, so if someone wants to give it a
try, the functionality that was there before the Singapore changes
should be back.
For those who are not on biosql-l, I implemented 'rules' in the
Postgres version of the schema that should now provide for
full-featured support for running biosql under Pg. As for what the
tests are worth, they all pass without complaints.
Note that the Oracle support is still trailing, as not even that schema
is up to speed with the Singapore changes. It's going to come soon
though.
-hilmar
--
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Hilmar Lapp email: lapp at gnf.org
GNF, San Diego, Ca. 92121 phone: +1-858-812-1757
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