[Bioperl-l] cigar string in GenericHSP

[Elia Stupka]

> Ah but now I look closer that cigar line fmt is MSA specific in
> SimpleAlign is different so never mind - glad you got it to fit into 
> HSP.
> we may look at generalizing it to fit into HSPI so that other
> implementations can make use of it too.  Or perhaps moving it to
> SearchUtils.  We'll see.

We should also think of a nice method in the right place to dump out 
GFF with cigar line as an attribute in the end, it'd be the most 
compact way of storing blast hits in files I'd say...

Elia