[Bioperl-l] BioFetch_DB.t fails 4 tests

[Heikki Lehvaslaiho]

Only one test fails now for me:

not ok 18
# Test 18 got: '0' (t/BioFetch_DB.t at line 92)
#    Expected: '103'

This is caused by asking sequence in fasta format from swall database.
Setting verbose to 2 gives:

request is POST http://www.ebi.ac.uk/cgi-bin/dbfetch
Content-Length: 43
Content-Type: application/x-www-form-urlencoded

db=swall&id=P43780&format=fasta&style=raw

Which pasted into browser as:

http://www.ebi.ac.uk/cgi-bin/dbfetch?db=swall&id=P43780&format=fasta&style=raw

retieves the enry ok. 


Retrieving anything in fasta format using BioFetch is now broken, but I
can not figure out where the error comes from. Anyone?

	-Heikki


On Fri, 2003-03-07 at 02:11, Hilmar Lapp wrote:
> not ok 18
> # Test 18 got: '0' (t/BioFetch_DB.t at line 92)
> #    Expected: '103'
> ok 19
> not ok 20
> # Test 20 got: '0' (t/BioFetch_DB.t at line 115)
> #    Expected: '408'
> not ok 21
> # Test 21 got: '408' (t/BioFetch_DB.t at line 116)
> #    Expected: '1611'
> not ok 22
> # Test 22 got: '1611' (t/BioFetch_DB.t at line 117)
> #    Expected: '200'
> 
> All others are ok.
-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho          heikki at ebi.ac.uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
___ _/_/_/_/_/________________________________________________________