[Bioperl-l] Bioperl module for upstream/downstream genes ?

Charles A. Alexander charles.alexander at vanderbilt.edu
Mon Mar 24 11:43:49 EST 2003


Hello

I was wondering if anybody knows of a module, that given a specific gene
name or coordinate can find the first transcription start site for a
(preferably Refseq) gene upstream/downstream from the initial gene location.

I looked through the Bioperl documentation and it wasn't obvious if anything
like this exists for the Santa Cruz Genome Browser or Ensembl based
annotations.

Thanks in advance,

Charles Alexander
-- 
Charles Alexander, Bioinformatics Specialist
615 322-0855 (Day)/615 343-8619 (Fax)
charles.alexander at vanderbilt.edu



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