2002-September Archives by Date

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Starting: Sun Sep 1 00:43:38 2002
Ending: Mon Sep 30 23:02:42 2002
Messages: 484

• [Open-bio-l] Re: [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Jason Stajich
• [Open-bio-l] Re: [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Hilmar Lapp
• [Open-bio-l] Re: [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Elia Stupka
• [Bioperl-l] biodata (was Re: bioperl commit)   Steve Chervitz
• [Bioperl-l] OntologyTermI   Chris Mungall
• [Bioperl-l] OntologyTermI   Chris Mungall
• [Bioperl-l] OntologyTermI   Ewan Birney
• [Bioperl-l] Bug fixes; SeqIO issues   Ewan Birney
• [Bioperl-l] OntologyTermI   Chris Mungall
• [Bioperl-l] Bug fixes; SeqIO issues   Hilmar Lapp
• [Bioperl-l] OntologyTermI   Hilmar Lapp
• [Bioperl-l] OntologyTermI   Hilmar Lapp
• [Open-bio-l] Re: [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Hilmar Lapp
• Converting BLAST files to HTMLRe: [Bioperl-l] longest ORF (fwd)   David Schibeci
• [Bioperl-l] Parsing of Genewise output   Ogsen.Gabrielyan@bc.boehringer-ingelheim.com
• [Bioperl-l] Parsing of Genewise output   Ewan Birney
• [Bioperl-l] Parsing of Genewise output   Elia Stupka
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Aaron J Mackey
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Ewan Birney
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Matthew Pocock
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Aaron J Mackey
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Ewan Birney
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Aaron J Mackey
• [Bioperl-l] Stupid questions   Joao Magalhaes
• [Bioperl-l] questions   Wijk, Rik van
• [Bioperl-l] OntologyTermI   Lincoln Stein
• [Bioperl-l] OntologyTermI   Lincoln Stein
• [Bioperl-l] OntologyTermI   Lincoln Stein
• [Bioperl-l] OntologyTermI   Hilmar Lapp
• [Bioperl-l] OntologyTermI   Hilmar Lapp
• [Bioperl-l] questions   Ewan Birney
• [Bioperl-l] questions   simon andrews (BI)
• [Bioperl-l] how to catch exception error   Steve Chervitz
• [Bioperl-l] Bio::DB::SwissProt vs proxy   David Guzman
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Aaron J Mackey
• [Bioperl-l] New Fink Bioperl dependency installer, etc.   Steven Cannon
• [Bioperl-l] how to catch exception error   Hilmar Lapp
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Hilmar Lapp
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Aaron J Mackey
• [Bioperl-l] New Fink Bioperl dependency installer, etc.   Hilmar Lapp
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Hilmar Lapp
• [Bioperl-l] New Fink Bioperl dependency installer, etc., Bio::Graphics on Mac OS X   Gudmundur Arni Thorisson
• [Bioperl-l] New Fink Bioperl dependency installer, etc.   Steven Cannon
• [Bioperl-l] PrimarySeqI::primary_id and IdentifiableI::object_id   Hilmar Lapp
• [Bioperl-l] Bio::Graphics/Bio::Graphics::Browser question   Rhazes Spell
• [Bioperl-l] errors when aligning   Maurice Manning
• [Bioperl-l] IdentifiableI::version   Hilmar Lapp
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Jason Stajich
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Ewan Birney
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Ewan Birney
• [Bioperl-l] errors when aligning   Jason Stajich
• [Bioperl-l] Bio::Graphics/Bio::Graphics::Browser question   Marc Logghe
• [Bioperl-l] Cannot access open-bio.org   Mick Watson
• [Bioperl-l] Regarding seqio module.......   Venkatesh SG
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Aaron J Mackey
• [Bioperl-l] Bio::DB:GFF   Oliver Burren
• [Bioperl-l] Bio::DB:GFF   Marc Logghe
• [Bioperl-l] Converting BLAST alignments to HTML   Charles Hauser
• [Bioperl-l] Re: Frameshifts in alignments ... ?   Hilmar Lapp
• [Bioperl-l] Cannot access open-bio.org   Jason Stajich
• [Bioperl-l] Newbie Q's   Pat Schloss
• [Bioperl-l] Newbie Q's   Jason Stajich
• [Bioperl-l] PrimarySeqI and IdentifiableI   Hilmar Lapp
• [Bioperl-l] PrimarySeqI and IdentifiableI   Ewan Birney
• [Bioperl-l] Protein Isoelectric Point calculation   Southern, Mark R
• [Bioperl-l] PrimarySeqI and IdentifiableI   Hilmar Lapp
• [Bioperl-l] PrimarySeqI and IdentifiableI   Ewan Birney
• [Bioperl-l] RE: BioPerl question   Brian Desany
• [Bioperl-l] PrimarySeqI and IdentifiableI   Hilmar Lapp
• [Bioperl-l] Beginners question   Charles Hauser
• [Bioperl-l] Bio::BioEntry   Hilmar Lapp
• [Bioperl-l] Regarding seqio module.......   Steve Chervitz
• [Bioperl-l] PrimarySeqI and IdentifiableI   Shawn
• [Bioperl-l] molecule & alphabet   Hilmar Lapp
• [Bioperl-l] Bio::BioEntry   Ewan Birney
• [Bioperl-l] Bio::BioEntry   Aaron J Mackey
• [Bioperl-l] Bio::BioEntry   Hilmar Lapp
• [Bioperl-l] Dbfetch and SRS   Vilanova,David,LAUSANNE,NRC/BS
• [Bioperl-l] Bug in StandAloneBlast.pm concerning BLASTDIR-Environmentvariable   Michael Spitzer
• [Bioperl-l] RE: BioPerl question   Daniel Barker
• [Bioperl-l] Bio::BioEntry   Lincoln Stein
• [Bioperl-l] Bio::DB:GFF   Lincoln Stein
• [Bioperl-l] Bio::Graphics/Bio::Graphics::Browser question   Lincoln Stein
• [Bioperl-l] OntologyTermI   Lincoln Stein
• [Bioperl-l] HSP alignments using AlignIO   Charles Hauser
• [Bioperl-l] OntologyTermI   Paul Gordon
• [Bioperl-l] Bio::DB:GFF   Oliver Burren
• [Bioperl-l] RE: gbrowse running on biosql   Hilmar Lapp
• [Bioperl-l] Bio::BioEntry   Hilmar Lapp
• [Bioperl-l] OntologyTermI   Hilmar Lapp
• [Bioperl-l] GenBank Flat File Parser   John Kloss
• [Bioperl-l] Bio::Factory::ObjectFactoryI::create   Hilmar Lapp
• [Bioperl-l] GenBank Flat File Parser   Hilmar Lapp
• [Bioperl-l] tests failing badly   Hilmar Lapp
• [Bioperl-l] tests failing badly   Steve Chervitz
• [Bioperl-l] tests failing badly   Hilmar Lapp
• [Bioperl-l] tests failing badly   Hilmar Lapp
• [Bioperl-l] tests failing badly   Aaron J Mackey
• [Bioperl-l] tests failing badly   Aaron J Mackey
• [Bioperl-l] tests failing badly   Aaron J Mackey
• [Bioperl-l] tests failing badly   Hilmar Lapp
• [Bioperl-l] tests failing badly   Hilmar Lapp
• [Bioperl-l] tests failing badly   Aaron J Mackey
• [Bioperl-l] tests failing badly   Hilmar Lapp
• [Bioperl-l] substitutions   Hilmar Lapp
• [Bioperl-l] substitutions   Hilmar Lapp
• [Bioperl-l] substitutions   Hilmar Lapp
• [Bioperl-l] Phenotype and OMIM (OMIMparser)   Chris Zmasek
• FW: [Bioperl-l] Phenotype and OMIM (OMIMparser)   Chris Zmasek
• [Bioperl-l] Bio::Factory::ObjectFactoryI::create   Ewan Birney
• [Bioperl-l] write_seq 2 variable?   michael
• [Bioperl-l] new module location   Jaime.Prilusky@weizmann.ac.il
• [Bioperl-l] Re: Target class on gbrowse   Lincoln Stein
• [Bioperl-l] cvs server broken....   Mick Watson
• [Bioperl-l] write_seq 2 variable?   Marc Logghe
• [Bioperl-l] cvs server broken....   Chris Dagdigian
• [Bioperl-l] substitutions   Aaron J Mackey
• [Bioperl-l] sim4   Ewan Birney
• [Bioperl-l] new module location   Ewan Birney
• [Bioperl-l] Bio::SeqFeature->feature_seq   Ewan Birney
• [Bioperl-l] substitutions   Hilmar Lapp
• [Bioperl-l] Bio::SeqFeature->feature_seq   Hilmar Lapp
• [Bioperl-l] tests failing badly   Shawn
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1243 (fwd)   Jason Stajich
• [Bioperl-l] Bio::SeqFeature->feature_seq   Ewan Birney
• [Bioperl-l] RemoteBlast and psiblast   Hadas Leonov
• [Bioperl-l] Remote Psi-Blast   Yael Spector
• [Bioperl-l] Protein Isoelectric Point calculation   Aaron J Mackey
• [Bioperl-l] Bio::SeqFeature->feature_seq   Lincoln Stein
• [Bioperl-l] Remote Psi-Blast   Jason Stajich
• [Bioperl-l] RemoteBlast and psiblast   Jason Stajich
• [Bioperl-l] RemoteBlast and psiblast   Aaron J Mackey
• [Bioperl-l] Bio::DB::GFF fgroup table def   Jay Hesselberth
• [Bioperl-l] parsing blast results   Charles Hauser
• [Bioperl-l] parsing blast results   Ewan Birney
• [Bioperl-l] splicedseq or not   Ewan Birney
• [Bioperl-l] RemoteBlast fixes   Wiepert, Mathieu
• [Bioperl-l] GenBankParser comparison to bioperl parser   John Kloss
• [Bioperl-l] SearchIO function to save raw blast output?   Wiepert, Mathieu
• [Bioperl-l] GenBankParser comparison to bioperl parser   Jason Stajich
• [Bioperl-l] splicedseq or not   Hilmar Lapp
• [Bioperl-l] SearchIO function to save raw blast output?   Jason Stajich
• [Bioperl-l] SearchIO function to save raw blast output?   Wiepert, Mathieu
• [Bioperl-l] SearchIO function to save raw blast output?   Wiepert, Mathieu
• [Bioperl-l] Protein Isoelectric Point calculation   Southern, Mark R
• [Bioperl-l] release status   Allen Smith
• [Bioperl-l] t/SimpleAlign: not ok 18   Allen Smith
• [Bioperl-l] GenBankParser comparison to bioperl parser   Ewan Birney
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Ewan Birney
• [Bioperl-l] t/SimpleAlign: not ok 18   Ewan Birney
• [Bioperl-l] t/SimpleAlign: not ok 18   Allen Smith
• [Bioperl-l] release status   Kris Boulez
• [Bioperl-l] GenBankParser comparison to bioperl parser   Elia Stupka
• [Bioperl-l] GenBankParser comparison to bioperl parser   Ewan Birney
• [Bioperl-l] GenBankParser comparison to bioperl parser   Elia Stupka
• [Bioperl-l] GenBankParser comparison to bioperl parser   Ewan Birney
• [Bioperl-l] GenBankParser comparison to bioperl parser   Elia Stupka
• [Bioperl-l] GenBankParser comparison to bioperl parser   Ewan Birney
• [Bioperl-l] GenBankParser comparison to bioperl parser   Ewan Birney
• [Bioperl-l] GenBankParser comparison to bioperl parser   Elia Stupka
• [Bioperl-l] GenBankParser comparison to bioperl parser   Elia Stupka
• [Bioperl-l] t/SimpleAlign: not ok 18   Jason Stajich
• [Bioperl-l] GenBankParser comparison to bioperl parser   Ian Korf
• [Bioperl-l] t/SimpleAlign: not ok 18   Heikki Lehvaslaiho
• [Bioperl-l] Protein Isoelectric Point calculation   Aaron J Mackey
• [Bioperl-l] GenBankParser comparison to bioperl parser   John Pearson
• [Bioperl-l] GenBankParser comparison to bioperl parser   Lincoln Stein
• [Bioperl-l] GenBankParser comparison to bioperl parser   Lincoln Stein
• [Bioperl-l] GenBankParser comparison to bioperl parser   Lincoln Stein
• [Bioperl-l] GenBankParser comparison to bioperl parser   Ewan Birney
• [Bioperl-l] GenBankParser comparison to bioperl parser   Elia Stupka
• [Bioperl-l] GenBankParser comparison to bioperl parser   Gudmundur Arni Thorisson
• [Bioperl-l] GenBankParser comparison to bioperl parser   Gudmundur Arni Thorisson
• [Bioperl-l] GenBankParser comparison to bioperl parser   Hilmar Lapp
• [Bioperl-l] GenBankParser comparison to bioperl parser   Ewan Birney
• [Bioperl-l] GenBankParser comparison to bioperl parser   Ewan Birney
• [Bioperl-l] GenBankParser comparison to bioperl parser   Aaron J Mackey
• [Bioperl-l] GenBankParser comparison to bioperl parser   John Kloss
• [Bioperl-l] SeqIO profiling   Aaron J Mackey
• [Bioperl-l] GenBankParser comparison to bioperl parser   John Kloss
• [Bioperl-l] t/SimpleAlign: not ok 18   Allen Smith
• [Bioperl-l] Description of PhenotypeI and OMIMentry   Chris Zmasek
• [Bioperl-l] Bio::Ontology::TermI   Chris Zmasek
• [Bioperl-l] Questions re/ GO parser (1/2) definition_references vs database cross-references   Chris Zmasek
• [Bioperl-l] Questions re/ GO parser (2/2) streaming vs graph output   Chris Zmasek
• [Bioperl-l] Bio::Annotation   Hilmar Lapp
• [Bioperl-l] GenBankParser comparison to bioperl parser   Lincoln Stein
• [Bioperl-l] GenBankParser comparison to bioperl parser   Lincoln Stein
• [Bioperl-l] GenBankParser comparison to bioperl parser   Lincoln Stein
• [Bioperl-l] what about Bio::Annotation::DBLink is-a Bio::IdentifiableI   Hilmar Lapp
• [Bioperl-l] remoteblast result in text format   Damien Mattei
• [Bioperl-l] www.bioperl.org down?   Charles Hauser
• [Bioperl-l] Possible bug in Bio::SearchIO   Charles Hauser
• [Bioperl-l] what about Bio::Annotation::DBLink is-a Bio::IdentifiableI   Ewan Birney
• [Bioperl-l] SeqIO profiling   Ewan Birney
• [Bioperl-l] Question   Perl yang
• [Bioperl-l] SeqIO profiling   Hilmar Lapp
• [Bioperl-l] what about Bio::Annotation::DBLink is-a Bio::IdentifiableI   Hilmar Lapp
• [Bioperl-l] Question   Jason Stajich
• [Bioperl-l] t/SimpleAlign: not ok 18   Allen Smith
• [Bioperl-l] t/SimpleAlign: not ok 18   Jason Stajich
• [Bioperl-l] GenBankParser comparison to bioperl parser   Jason Stajich
• [Bioperl-l] example on how to use Bio::Phenotype::OMIM::OMIMparser   Chris Zmasek
• [Bioperl-l] Building consensus sequence from ESTs   Andrew Macgregor
• [Bioperl-l] writing genbank files   gert thijs
• [Bioperl-l] SeqIO profiling   Aaron J Mackey
• [Bioperl-l] t/SimpleAlign: not ok 18   Heikki Lehvaslaiho
• [Bioperl-l] SeqIO profiling   Aaron J Mackey
• [Bioperl-l] t/SimpleAlign: not ok 18   Allen Smith
• [Bioperl-l] t/SimpleAlign: not ok 18   Allen Smith
• [Bioperl-l] Building consensus sequence from ESTs   Fernan Aguero
• [Bioperl-l] t/SimpleAlign: not ok 18   Jason Stajich
• [Bioperl-l] t/SimpleAlign: not ok 18   Heikki Lehvaslaiho
• [Bioperl-l] t/SimpleAlign: not ok 18   Allen Smith
• [Bioperl-l] t/SimpleAlign: not ok 18   Heikki Lehvaslaiho
• [Bioperl-l] . Old LocusLink Release?   Simon Lin
• [Bioperl-l] =?iso-8859-1?Q?mailing_list?=   =?utf-8?Q?szanivan@libero.it?=
• [Bioperl-l] RNA folding   David J. Evans
• [Bioperl-l] Building consensus sequence from ESTs   Elia Stupka
• [Bioperl-l] writing genbank files   Hilmar Lapp
• Fwd: [Bioperl-l] example on how to use Bio::Phenotype::OMIM::OMIMparser   Hilmar Lapp
• [Bioperl-l] Building consensus sequence from ESTs   Elia Stupka
• [Bioperl-l] simplealign, prediction parsers   Richard Adams
• [Bioperl-l] SeqIO profiling   Hilmar Lapp
• [Bioperl-l] Question   Perl yang
• [Bioperl-l] remoteblast result in text format   Damien Mattei
• [Bioperl-l] remoteblast result in text format   Wiepert, Mathieu
• [Bioperl-l] Question   Jason Stajich
• [Bioperl-l] simplealign, prediction parselist   Heikki Lehvaslaiho
• [Bioperl-l] writing genbank files   gert thijs
• [Bioperl-l] Re: [BioSQL-l] molecule & alphabet   Thomas Down
• [Bioperl-l] tree building, analysis interfaces (long)   Jason Stajich
• [Bioperl-l] tree building, analysis interfaces (long)   Shawn
• [Bioperl-l] writing genbank files   Hilmar Lapp
• [Bioperl-l] writing genbank files   Jason Stajich
• [Bioperl-l] simplealign, prediction parselist   Richard Adams
• [Bioperl-l] next method of Bio::Phenotype::OMIM::OMIMparser   Chris Zmasek
• [Bioperl-l] CORRECTION: next method of Bio::Phenotype::OMIM::OMIMparser   Chris Zmasek
• [Bioperl-l] Species name validation   Hilmar Lapp
• [Bioperl-l] RNA folding   Sourav Bandyopadhyay
• [Bioperl-l] $obj->clone   Hilmar Lapp
• [Bioperl-l] SeqIO profiling   Matthew Pocock
• [Bioperl-l] next method of Bio::Phenotype::OMIM::OMIMparser   Ewan Birney
• [Bioperl-l] CORRECTION: next method of Bio::Phenotype::OMIM::OMIMparser   Ewan Birney
• [Bioperl-l] $obj->clone   Ewan Birney
• [Bioperl-l] $obj->clone   Hilmar Lapp
• [Bioperl-l] tree building, analysis interfaces (long)   Elia Stupka
• [Bioperl-l] swiss parsing   Elia Stupka
• [Bioperl-l] writing genbank files   gert thijs
• [Bioperl-l] swiss parsing   gert thijs
• [Bioperl-l] ...analysis interfaces   Martin Senger
• [Bioperl-l] swiss parsing   Elia Stupka
• [Bioperl-l] writing genbank files   Elia Stupka
• [Bioperl-l] simplealign, prediction parselist   Heikki Lehvaslaiho
• [Bioperl-l] swiss parsing   Heikki Lehvaslaiho
• [Bioperl-l] SeqIO profiling   Ewan Birney
• [Bioperl-l] issues with _rearrange   Aaron J Mackey
• [Bioperl-l] Re: issues with _rearrange   Aaron J Mackey
• [Bioperl-l] low complxity filter in RemoteBlast   Yael Spector
• [Bioperl-l] low complexity filter in RemoteBlast   Wiepert, Mathieu
• [Bioperl-l] Bio::Ontology   Chris Mungall
• [Bioperl-l] $obj->clone   ecky@e-lehmann.de
• [Bioperl-l] removing BEGIN blocks?   Heikki Lehvaslaiho
• [Bioperl-l] Bio::Ontology   Ewan Birney
• [Bioperl-l] SeqIO profiling   Steve Chervitz
• [Bioperl-l] $obj->clone   Hilmar Lapp
• [Bioperl-l] SeqIO profiling   Aaron J Mackey
• [Bioperl-l] Re: removing BEGIN blocks?   Aaron J Mackey
• [Bioperl-l] Bio::Ontology   Chris Mungall
• [Bioperl-l] SeqIO profiling   Hilmar Lapp
• [Bioperl-l] swiss parsing   Hilmar Lapp
• [Bioperl-l] Bio::Ontology   Hilmar Lapp
• [Bioperl-l] Re: issues with _rearrange   Steve Chervitz
• [Bioperl-l] Bio::Ontology   Chris Mungall
• [Bioperl-l] query/subject in HMMER report   Jason Stajich
• [Bioperl-l] SeqIO profiling   Tim Bunce
• [Bioperl-l] $obj->clone   Tim Bunce
• [Bioperl-l] $obj->clone   Hilmar Lapp
• [Bioperl-l] SeqIO profiling   Hilmar Lapp
• [Bioperl-l] Re: issues with _rearrange   Hilmar Lapp
• [Bioperl-l] Bio::Ontology   Hilmar Lapp
• [Bioperl-l] /StandAloneBlast...[bl2seq] ERROR: BlastKarlinBlkGappedCalc: BL_ORD_ID is not a supported matrix   Jan H. Julian
• [Bioperl-l] Bio::Ontology   Hilmar Lapp
• [Bioperl-l] Re: issues with _rearrange   Aaron J Mackey
• [Bioperl-l] Re: issues with _rearrange   Matthew Pocock
• [Bioperl-l] Re: issues with _rearrange   Aaron J Mackey
• [Bioperl-l] Re: issues with _rearrange   Aaron J Mackey
• [Bioperl-l] Re: issues with _rearrange   Ewan Birney
• [Bioperl-l] $obj->clone   Tim Bunce
• [Bioperl-l] Re: issues with _rearrange   Aaron J Mackey
• [Bioperl-l] Re: issues with _rearrange   Tim Bunce
• [Bioperl-l] Re: issues with _rearrange   Ewan Birney
• [Bioperl-l] Re: issues with _rearrange   Jason Stajich
• [Bioperl-l] Re: issues with _rearrange   Aaron J Mackey
• [Bioperl-l] Re: issues with _rearrange   Ewan Birney
• [Bioperl-l] Re: issues with _rearrange   Hilmar Lapp
• [Bioperl-l] Re: issues with _rearrange   Hilmar Lapp
• [Bioperl-l] BLAST Parsing   Paul Boutros
• [Bioperl-l] Re: issues with _rearrange   Ewan Birney
• [Bioperl-l] Re: issues with _rearrange   Hilmar Lapp
• [Bioperl-l] RemoteBlast save_output   Wiepert, Mathieu
• [Bioperl-l] BLAST Parsing   Jason Stajich
• [Bioperl-l] BLAST Parsing   Ewan Birney
• [Bioperl-l] RemoteBlast save_output   Ewan Birney
• [Bioperl-l] Bio::Tools::Seg: zero documentation   Hilmar Lapp
• [Bioperl-l] Bio::Ontology::TermI   Hilmar Lapp
• [Bioperl-l] Bio::Annotation   Hilmar Lapp
• [Bioperl-l] Bio::Tools::Seg: zero documentation   Allen Smith
• [Bioperl-l] Bio::Ontology   Hilmar Lapp
• [Bioperl-l] Bio::Ontology::TermI   Chris Zmasek
• [Bioperl-l] Bio::Ontology   Chris Zmasek
• CORRECTION RE: [Bioperl-l] Bio::Ontology   Chris Zmasek
• [Bioperl-l] Bio::Tools::Seg: zero documentation   Elia Stupka
• [Bioperl-l] Bio::Tools::Seg: zero documentation   Hilmar Lapp
• [Bioperl-l] Bio::Tools::Seg: zero documentation   Elia Stupka
• [Bioperl-l] {flush,remove}_<Object>   Hilmar Lapp
• [Bioperl-l] (no subject)   Paulo Eduardo
• [Bioperl-l] Bio::Annotation   Ewan Birney
• [Bioperl-l] Bio::Ontology   Ewan Birney
• CORRECTION RE: [Bioperl-l] Bio::Ontology   Ewan Birney
• [Bioperl-l] {flush,remove}_<Object>   Ewan Birney
• [Bioperl-l] Push for 1.1.1 developer's release this week   Ewan Birney
• [Bioperl-l] Apologies in order   Ewan Birney
• [Bioperl-l] Apologies in order   Ewan Birney
• [Bioperl-l] Bio::Ontology   Chris Mungall
• [Bioperl-l] Bio::Annotation   Hilmar Lapp
• [Bioperl-l] SeqIO profiling   Jason Stajich
• [Bioperl-l] Bio::Ontology   Hilmar Lapp
• [Bioperl-l] {flush,remove}_<Object>   Hilmar Lapp
• [Bioperl-l] Bio::Annotation   Hilmar Lapp
• [Bioperl-l] {flush,remove}_<Object>   Ewan Birney
• [Bioperl-l] Bio::Annotation   Ewan Birney
• [Bioperl-l] SeqIO profiling   Ewan Birney
• [Bioperl-l] SeqIO profiling   Hilmar Lapp
• [Bioperl-l] Bio::Ontology   Hilmar Lapp
• [Bioperl-l] Push for 1.1.1 developer's release this week   Hilmar Lapp
• [Bioperl-l] Push for 1.1.1 developer's release this week   Ewan Birney
• [Bioperl-l] SeqIO profiling   Jason Stajich
• [Bioperl-l] Push for 1.1.1 developer's release this week   Elia Stupka
• [Bioperl-l] 尊敬的新老客户：您好!   web
• [Bioperl-l] SeqIO profiling   Ewan Birney
• [Bioperl-l] array attribute method naming convention   Hilmar Lapp
• POD fixes Re: [Bioperl-l] Push for 1.1.1 developer's release this week   Heikki Lehvaslaiho
• [Bioperl-l] Re: issues with _rearrange   Tim Bunce
• [Bioperl-l] Re: issues with _rearrange   Tim Bunce
• [Bioperl-l] simplealign, prediction parselist   Richard Adams
• [Bioperl-l] simplealign, prediction parselist   Heikki Lehvaslaiho
• [Bioperl-l] Apologies in order   Tim Bunce
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Tim Bunce
• [Bioperl-l] Sequence qual values   Charles Hauser
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Jason Stajich
• [Bioperl-l] Sequence qual values   Brian Desany
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Ewan Birney
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Heikki Lehvaslaiho
• [Bioperl-l] Sequence qual values   Hilmar Lapp
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Tim Bunce
• [Bioperl-l] Genbank problem   Joao Magalhaes
• [Bioperl-l] Re: [Bioperl-guts-l] BioPerl Installation failure--help!!!!!!!   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1256 (fwd)   Jason Stajich
• POD fixes Re: [Bioperl-l] Push for 1.1.1 developer's release this week   Lincoln Stein
• [Bioperl-l] Bio::Annotation::SimpleValue, keywords()   Hilmar Lapp
• [Bioperl-l] Bio::Tools::Run::RemoteBlast not getting all hits   Dan Kortschak
• [Bioperl-l] Bio::Tools::Run::RemoteBlast not getting all hits   Jason Stajich
• [Bioperl-l] Bio::Tools::Run::RemoteBlast not getting all hits   Wiepert, Mathieu
• solved: Re: [Bioperl-l] Bio::Tools::Run::RemoteBlast not getting all hits   Dan Kortschak
• [Bioperl-l] Re: issues with _rearrange   Hilmar Lapp
• POD fixes Re: [Bioperl-l] Push for 1.1.1 developer's release this week   Ewan Birney
• [Bioperl-l] Sequence qual values   Andrew Walsh
• [Bioperl-l] sp. and gen. in species definition   Ewan Birney
• [Bioperl-l] Species validation   Ewan Birney
• POD fixes Re: [Bioperl-l] Push for 1.1.1 developer's release this week   Heikki Lehvaslaiho
• [Bioperl-l] Species validation   Hilmar Lapp
• [Bioperl-l] Species validation   Ewan Birney
• solved: Re: [Bioperl-l] Bio::Tools::Run::RemoteBlast not gettingall hits   Wiepert, Mathieu
• [Bioperl-l] sp. and gen. in species definition   Jason Stajich
• [Bioperl-l] sp. and gen. in species definition   Ewan Birney
• [Bioperl-l] SeqIO parsing   Ewan Birney
• [Bioperl-l] Bio::Annotation::SimpleValue, keywords()   Ewan Birney
• [Bioperl-l] Parsing XML entry :Please help   kumar s
• [Bioperl-l] SeqIO parsing   Hilmar Lapp
• [Bioperl-l] Bio::Annotation::SimpleValue, keywords()   Hilmar Lapp
• [Bioperl-l] Bio::AnnotationI::tagname   Hilmar Lapp
• [Bioperl-l] SeqIO parsing   Ewan Birney
• [Bioperl-l] SeqIO parsing   Hilmar Lapp
• [Bioperl-l] SeqIO parsing   Ewan Birney
• [Bioperl-l] SeqIO parsing   Hilmar Lapp
• [Bioperl-l] SeqIO parsing   Allen Smith
• [Bioperl-l] SeqIO parsing   Hilmar Lapp
• [Bioperl-l] Bio::AnnotationI::tagname   Hilmar Lapp
• [Bioperl-l] SeqIO parsing   Heikki Lehvaslaiho
• [Bioperl-l] SeqIO parsing   Matthew Pocock
• [Bioperl-l] SeqIO parsing   Jason Stajich
• [Bioperl-l] 尊敬的客户：   qjdong3000
• [Bioperl-l] TCoffee.pm in windows   Fernandez-Capetillo, Oscar (NCI)
• [Bioperl-l] TCoffee.pm in windows   Jason Stajich
• [Bioperl-l] Bio::AnnotationI::tagname   Ewan Birney
• [Bioperl-l] SeqIO parsing   Ewan Birney
• [Bioperl-l] SeqIO parsing   Hilmar Lapp
• [Bioperl-l] Annotation of features   Hilmar Lapp
• [Bioperl-l] Annotation of features   David Block
• [Bioperl-l] Bio::Ontology -- category() and version()   Chris Zmasek
• [Bioperl-l] Annotation of features   Lincoln Stein
• [Bioperl-l] Bio::SeqFeatureI issues   Hilmar Lapp
• [Bioperl-l] VariationIO and Tempfile tests failing   Hilmar Lapp
• [Bioperl-l] Annotation of features   Ewan Birney
• [Bioperl-l] Bio::SeqFeatureI issues   Ewan Birney
• [Bioperl-l] VariationIO and Tempfile tests failing   Heikki Lehvaslaiho
• [Bioperl-l] VariationIO and Tempfile tests failing   Ewan Birney
• [Bioperl-l] VariationIO and Tempfile tests failing   Heikki Lehvaslaiho
• [Bioperl-l] VariationIO and Tempfile tests failing   Jason Stajich
• [Bioperl-l] Annotation of features   David Block
• [Bioperl-l] bl2seq, get high scoring matches   Tobias Thierer
• [Bioperl-l] bl2seq, get high scoring matches   Tobias Thierer
• [Bioperl-l] VariationIO and Tempfile tests failing   Hilmar Lapp
• [Bioperl-l] Bio::SeqFeatureI issues   Hilmar Lapp
• [Bioperl-l] seqfeature.display_id   Hilmar Lapp
• [Bioperl-l] Re: [BioSQL-l] seqfeature.display_id   Hilmar Lapp
• [Bioperl-l] flush arrays   Hilmar Lapp
• [Bioperl-l] Genbank to ACEDB?   Joseph Bedell
• [Bioperl-l] SeqIO Error?   Paul Boutros
• [Bioperl-l] interface checking code   Matthew Pocock
• Solved: Re: [Bioperl-l] SeqIO Error?   Paul Boutros
• Solved: Re: [Bioperl-l] SeqIO Error?   Hilmar Lapp
• [Bioperl-l] seqfeature.bulkset   Hilmar Lapp
• [Bioperl-l] BioGraphics test failing   Hilmar Lapp
• [Bioperl-l] Bio::SeqFeatureI issues   Hilmar Lapp
• [Bioperl-l] attribute setting and return value   Hilmar Lapp
• [Bioperl-l] adding seqfeatures in Bio::Seq   Hilmar Lapp
• [Bioperl-l] adding seqfeatures in Bio::Seq   Jason Stajich
• [Bioperl-l] Bio::SeqFeatureI issues   Ewan Birney
• [Bioperl-l] embl parser to extract exon lengths from feature table (FT)   Zayed Albertyn
• [Bioperl-l] SeqIO parsing   Tim Bunce
• [Bioperl-l] PODs again   Heikki Lehvaslaiho
• [Bioperl-l] Hspwriter and fasta   Vilanova,David,LAUSANNE,NRC/BS
• [Bioperl-l] Hspwriter and fasta   Aaron J Mackey
• [Bioperl-l] Hspwriter and fasta   Jason Stajich
• [Bioperl-l] embl parser to extract exon lengths from feature table (FT)   Hilmar Lapp
• [Bioperl-l] embl parser to extract exon lengths from feature table (FT)   Hilmar Lapp
• [Bioperl-l] bioperl-db branching off   Hilmar Lapp
• [Bioperl-l] Bio::SeqFeatureI issues   Hilmar Lapp
• [Bioperl-l] adding seqfeatures in Bio::Seq   Hilmar Lapp
• [Bioperl-l] adding seqfeatures in Bio::Seq   Hilmar Lapp
• [Bioperl-l] attribute setting and return value   Steve Chervitz
• [Bioperl-l] FASTA module   tiequan zhang
• [Bioperl-l] FASTA module   Jason Stajich
• [Bioperl-l] Bio::Matrix::Substitution alpha version   Allen Smith
• [Bioperl-l] 1.1.1 schedule; SeqIO speed ups   Ewan Birney
• [Bioperl-l] attribute setting and return value   Tim Bunce
• [Bioperl-l] adding seqfeatures in Bio::Seq   Ewan Birney
• [Bioperl-l] attribute setting and return value   Ewan Birney
• [Bioperl-l] attribute setting and return value   Aaron J Mackey
• [Bioperl-l] Speed ups checked in   Ewan Birney
• [Bioperl-l] Bio::Matrix::Substitution alpha version   Jason Stajich
• [Bioperl-l] Annotation object problem   Michael Muratet
• [Bioperl-l] Speed ups checked in   Andrew Dalke
• [Bioperl-l] Annotation object problem   Jason Stajich
• [Bioperl-l] attribute setting and return value   Hilmar Lapp
• [Bioperl-l] taxonomic information handler   Dan Kortschak
• [Bioperl-l] Bio::Matrix::Substitution alpha version   Allen Smith
• [Bioperl-l] attribute setting and return value   Tim Bunce
• [Bioperl-l] All tests pass;   Ewan Birney
• [Bioperl-l] Bio::GRaphics query   Richard Adams
• [Bioperl-l] Bio::GRaphics query   Aaron J Mackey
• [Bioperl-l] All tests pass;   Tim Bunce
• [Bioperl-l] All tests pass;   Ewan Birney
• [Bioperl-l] All tests pass;   Tim Bunce
• [Bioperl-l] Bio::Cluster::Family   Shawn
• [Bioperl-l] Bio::Root::RootI::DESTROY -> Bio::Root::Root::_cleanup_methods   Tim Bunce
• [Bioperl-l] Bio::Root::RootI::DESTROY -> Bio::Root::Root::_cleanup_methods   Jason Stajich
• [Bioperl-l] 65% speedup for Bio::SeqIO::fasta::next_seq test   Tim Bunce
• [Bioperl-l] Want a Big Penis?   jem486749@yahoo.com
• [Bioperl-l] Annotation objects   Michael Muratet
• [Bioperl-l] 65% speedup for Bio::SeqIO::fasta::next_seq test   Ewan Birney
• [Bioperl-l] Bio::Root::RootI::DESTROY -> Bio::Root::Root::_cleanup_methods   Ewan Birney
• [Bioperl-l] 65% speedup for Bio::SeqIO::fasta::next_seq test   Tim Bunce
• [Bioperl-l] 65% speedup for Bio::SeqIO::fasta::next_seq test   Ewan Birney
• [Bioperl-l] Bio::Root::RootI::DESTROY -> Bio::Root::Root::_cleanup_methods   Tim Bunce
• [Bioperl-l] Bio::Root::RootI::DESTROY -> Bio::Root::Root::_cleanup_methods   Ewan Birney
• [Bioperl-l] Bio::SeqFeature::AnnotationAdaptor   Hilmar Lapp
• [Bioperl-l] 65% speedup for Bio::SeqIO::fasta::next_seq test   Tim Bunce
• [Bioperl-l] StandAloneBlast.pm   Paul Boutros
• [Bioperl-l] 65% speedup for Bio::SeqIO::fasta::next_seq test   Matthew Pocock
• [Bioperl-l] BioGraphics test failing   Lincoln Stein
• [Bioperl-l] BioGraphics test failing   Hilmar Lapp

Last message date: Mon Sep 30 23:02:42 2002
Archived on: Thu Oct 3 19:06:03 2002

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