[Bioperl-l] Bio::BioEntry
Hilmar Lapp
hlapp@gnf.org
Fri, 6 Sep 2002 13:23:27 -0700
I'm thinking about creating a Bio::BioEntry object (no definitive
name yet) that would basically map to a bare-bones row in the
Bioentry table in BioSQL (you know that's where I'm coming from
presently don't you).
BioEntry would be different from PrimarySeq in not having a sequence
associated with it. Nonetheless, it would have a stable ID and live
in a namespace; it also has an optional description. Hence,
technically,
Bio::BioEntry is-a Bio::IdentifiableI
Bio::BioEntry is-a Bio::DescribableI
and that's about it.
Note that I'm not describing an ontology term, there is no hierarchy
or whatever here.
I'm undecided yet whether or not this is really going to help me,
but as a preliminary poll, if anyone has thoughts on this please
share.
-hilmar
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Hilmar Lapp email: lapp at gnf.org
GNF, San Diego, Ca. 92121 phone: +1-858-812-1757
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