[Open-bio-l] Re: [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit

[Hilmar Lapp]

Thanks Jason for implementing this so fast -- this is really cool.

	-hilmar

On Saturday, August 31, 2002, at 04:43  PM, Jason Stajich wrote:

>
>> download from CVS need to download a second module -- although
>> couldn't this be solved through some aliasing or so (Jason?).
>>
> Done.  Each project now has a new cvs module called 'biodata' which 
> is a
> symlink to /home/repository/biodata/biodata
>
> Each project also has a new entry in CVSROOT/modules which allow you to
> checkout all the necessary modules in a single cvs checkout.
> These are all named bioXX_all so:
>
> % cvs -d:ext:USERNAME@open-bio.org:/home/repository/bioperl co 
> bioperl_all
> % cvs -d:ext:USERNAME@open-bio.org:/home/repository/biopython co 
> biopython_all
> % cvs -d:ext:USERNAME@open-bio.org:/home/repository/biojava co 
> biojava_all
>
> One of the dirs in there is called biodata.  Which you can 
> alternatively
> checkout with the cvs module name 'biodata'.  It is also accessible in
> from /home/repository/biodata.   Chris -- we'll need to add it to the
> rsync list and/or verify that rsync is respecting the symlink.  If it
> isn't we'll have 3 copies of this dir on the anonymous CVS 
> machine - but
> perhaps that isn't a big deal anyways...
>
> All projects can make changes to the biodata directory (note the 
> need for
> a common group below) and the data will be shared across the projects.
>
> Note 1:
>
> People must be in the obfcommon group -- we'll have to make a 
> merged group
> at some point or else you'll get warning message when you try and 
> checkout
> this dir.  Someone else can sort this out please.  Too bad unix doesn't
> allow groups to be made up of other groups...
>
> Note 2:
> Additionally,  emails will only get sent to the lists if the toplevel
> CVSROOT for the modules (i.e. /home/repository/bioperl/CVSROOT) has 
> been
> configured to send mail (as in cvs commit mails to bioperl-guts-l).
>
> Note 3: Whenever Chris switches the CVS repository machine open-bio.org
> will become dev.open-bio.org
>
> Note 4:
> project admins may want to edit the cvs module list (do this:
> % cvs -d /home/repository/bioXXX co CVSROOT/ modules
> % cd CVSROOT
> % vi modules
> % cvs commit -m "added XX to the list"
> % cd ..
> % cvs release -d CVSROOT
> )
>
> -jason
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
>
>
--
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
-------------------------------------------------------------