[Bioperl-l] new module location

[Ewan Birney]

On Tue, 10 Sep 2002 lsprilus@bioinformatics.weizmann.ac.il wrote:

> Please take a look to
> ftp://bioinfo.weizmann.ac.il/outgoing/Bio-Maxd-0.01.tar.gz
> and suggest a place into the bioperl-live CVS to upload it.
>
> Bio::Maxd is in a working stage, but still unconnected to other bioperl
> modules/methods.

Jaime -

I managed to confuse you with someone else in the Weizman - I will look
into this module and where it should go -


Off hand - this should join the bioperl-db project (as it is access to the
database), and provide Bio::Expression::XXXXXXI compliant objects - Could
you sketch out in a main the main things the Bio::Maxd module does - eg.


  $maxd_db = Bio::Maxd->new(-host => 'myhost',database => 'db');

  $expt = $maxd_db->get_experiment($experiment_id);


etc




>
> Bio::Maxd provides methods for uploading and retrieving
> data to/from a maxd (MySQL) database.
>
> "maxd" is a data warehouse and visualization environment for
> microarray expression data developed by the Microarray Group at
> Manchester Bioinformatics (http://www.bioinf.man.ac.uk/microarray/)
>
> Thanks in advance,
>
> --
>  Dr Jaime Prilusky                | Jaime.Prilusky@weizmann.ac.il
>  Weizmann Institute of Science    | fax: 972-8-9344113
>  76100 Rehovot - Israel           | tel: 972-8-9344959
>
>  info URL http://bioinformatics.weizmann.ac.il/jaime_prilusky.html
>  OCA is at http://bioinformatics.weizmann.ac.il:8500
>
>
>
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