[Bioperl-l] Parsing of Genewise output

[Ogsen.Gabrielyan@bc.boehringer-ingelheim.com]

Hi!

I have a task to write a perl parser for Genewise output such as:

>Results xxxxxxxxxxxxxxxxxxxxxxxxxxx
(reverse) [0]

genewisedb output
Score 87.48 bits over entire alignment
Scores as bits over a synchronous coding model






                     Alignment 1 Score 87.48 (Bits)


cccccccc           1 TLEVMKKPRCGVPDVGEFNLFPGNPKWE
                     TL++MKKPRCGVPD+G+F+L+PGNPKWE
                     TLDMMKKPRCGVPDSGGFMLTPGNPKWE
Aaaaaaaa       23283 acgaaaacctggcgaggtatacgacatg
                     ctattaacgggtcagggtttccgacaga
                     tgcggagtctagtcttttgacaaccgga


//
.....

Does somebody know a prepared bio-perl module for parsing of above output
(similar to Genescan or Hmmer in bioperl-1.0.2::Bio::Tools )??

Thanks in advance.
Ogsen

Ogsen Gabrielyan
Boehringer Ingelheim Pharma KG  
Genomics Group - Bioinformatics

Birkendorfer Str. 65     
D-88397 Biberach an der Riss 
Germany	
Phone direct:	(+49) 7351 54 5887 
Phone secretary:	(+49) 7351 54 8346 
Fax:		(+49) 7351 54 5991
E-mail:              	ogsen.gabrielyan@bc.boehringer-ingelheim.com