[Bioperl-l] SeqIO profiling

[Hilmar Lapp]

On Thursday, September 19, 2002, at 03:11 PM, Tim Bunce wrote:

> On Wed, Sep 18, 2002 at 11:49:21PM +0100, Matthew Pocock wrote:
>> Hilmar Lapp wrote:
>>> On Tuesday, September 17, 2002, at 07:24 AM, Tim Bunce wrote:
>>>
>>>> The "too late to call INIT now" warning is hinting at what is
>>>> probably the real problem: some code is being loaded at run time.
>>>> Find that code.
>>>
>>> Thanks for the tip. Yes, we do load code at runtime.
>
> Why? Where? (in relation to SeqIO profiling)

The driver (that actually implements next_seq() and write_seq()) for 
the particular format is run-time loaded. In this case, 
Bio::SeqIO::fasta.pm will be run-time loaded.

Run-time loading happens at other places in Bioperl too.

	-hilmar
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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