[Bioperl-l] Bug fixes; SeqIO issues

[Ewan Birney]

Many thanks to the bug fixes by Steve/Jason and others


I have commited some more bug fixes from the bug tracking list. Slow and
steady is my aim here.


SeqIO has probably currently a nasty hidden bug due to fuzzy loading. I
think this is due to heikki's move to atomic locations which he wanted to
handle indels more cleanly. However, something is broken down there -
silently!


I have an exception being thrown but have switched this off until I can
chat with Heikki about the route out of here.



Yes - cue discussion of how messed up our-location-or-seqfeature heirarchy
is and I don't know the right route out of here. Hmph.



Anyway - beware fuzzies/bad string parsing in the location lines and I
have this as something to fix soon.






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Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
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