[Bioperl-l] TCoffee.pm in windows

[Fernandez-Capetillo, Oscar (NCI)]

	Hi there,

	I've modified Tcoffe.pm and IO.pm so that now it works in windows
environments in case someone wants it (it didn't before because the system
calls assume it is a UNIX environment). Just one question,

	Using tcoffe.pm for my scripts it does not create an .aln file so
that I can use it in other programs like clustalx. It just creates the
alignment object but there is no available method I can see that serves to
generate an aln file from an align object. Any suggestions?

	Thanks,

	Oskar

Oskar Fernandez-Capetillo, Ph. D.
 NCI Build., 10 Room 4A01
National Institute of Health
10 Center Drive
Bethesda, MD
20892, 1360

Phone: 301-594-3044
Fax:      301-496-0887
e-mail: fernando@mail.nih.gov
www: http://usuarios.lycos.es/h2ax/