[Bioperl-l] TCoffee.pm in windows

Fernandez-Capetillo, Oscar (NCI) fernando@mail.nih.gov
Wed, 25 Sep 2002 12:19:07 -0400


	Hi there,

	I've modified Tcoffe.pm and IO.pm so that now it works in windows
environments in case someone wants it (it didn't before because the system
calls assume it is a UNIX environment). Just one question,

	Using tcoffe.pm for my scripts it does not create an .aln file so
that I can use it in other programs like clustalx. It just creates the
alignment object but there is no available method I can see that serves to
generate an aln file from an align object. Any suggestions?

	Thanks,

	Oskar

Oskar Fernandez-Capetillo, Ph. D.
 NCI Build., 10 Room 4A01
National Institute of Health
10 Center Drive
Bethesda, MD
20892, 1360

Phone: 301-594-3044
Fax:      301-496-0887
e-mail: fernando@mail.nih.gov
www: http://usuarios.lycos.es/h2ax/