[Bioperl-l] Bio::Graphics/Bio::Graphics::Browser question

[Marc Logghe]

Hi,
When you want to put it as a independent landmark I would say this is
currently not possible. One possible way is to include it as a feature by
mapping it on the sequence of your 'primary organism'. Or, maybe I would
have to think more about that, a plugin can do the job (Annotator plugin ?).
Hmm, interesting problem.
No I would go for the plugin. I presume that your secondary organism is in a
separate GGB datasource ? If that is the case, then with ever request all
your configuration files (I mean for all sources) are read and parsed. In
that way it would be possible to reach your browser configuration data for
your secondary organism and set up all the  tracks you need in the plugin. 
HTH,
Marc

> -----Original Message-----
> From: Rhazes Spell [mailto:rus1@duke.edu] 
> Sent: Thursday, September 05, 2002 12:08 AM
> To: bioperl-l@bioperl.org
> Cc: gmod-devel@lists.sourceforge.net
> Subject: [Bioperl-l] Bio::Graphics/Bio::Graphics::Browser question
> 
> 
> I am interested in displaying a second Sequence from a 
> different organism in a track beneath the sequence region 
> from my "primary organism".  Has anyone attempted to do this? 
>  Is this even possible in the current Bio::Graphics::Panel 
> module? or with Bio::Graphics::Browser and GMOD?
> 
> Thanks in advance for any assistance and direction.
> Rhazes Spell
> 
> 
> **************************************
> Duke University
> Department of Biomedical Engineering
> Duke University Medical Center,
>  Center for Genome Technology
> 
> rhazes.spell@duke.edu
> 919.684.2720
> ***************************************
> 
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