[Bioperl-l] Annotation object problem

Michael Muratet mam@torchconcepts.com
Sun, 29 Sep 2002 18:13:51 -0500


Greetings

I am using Bioperl 1.0.1 on a file I just now downloaded from Genbank. I
am trying to extact the annotation data, and I get the following errors:

Using old style annotation call on new Annotation::Collection object
STACK Bio::Annotation::Collection::description
/usr/lib/perl5/site_perl/5.6.1/Bio/Annotation/Collection.pm:258
STACK toplevel ./processGenbank.pl:12
each_Reference (old style Annotation) on new style
Annotation::Collection
STACK Bio::Annotation::Collection::each_Reference
/usr/lib/perl5/site_perl/5.6.1/Bio/Annotation/Collection.pm:360
STACK toplevel ./processGenbank.pl:13
each_Comment (old style Annotation) on new style Annotation::Collection
STACK Bio::Annotation::Collection::each_Comment
/usr/lib/perl5/site_perl/5.6.1/Bio/Annotation/Collection.pm:402
STACK toplevel ./processGenbank.pl:14
each_DBLink (old style Annotation) on new style Annotation::Collection
STACK Bio::Annotation::Collection::each_DBLink
/usr/lib/perl5/site_perl/5.6.1/Bio/Annotation/Collection.pm:445
STACK toplevel ./processGenbank.pl:15
id


Is it trying to tell me that my bioperl is old style, or that the
Genbank file is old style?

Thanks.

Mike