Solved: Re: [Bioperl-l] SeqIO Error?

[Hilmar Lapp]

Honestly, I can only recommend _not_ running mixed versions ... if 
you do you're basically on your own ...

Seriously, and to everyone on the list who dreamt of doing this, the 
package is so big meanwhile and has so many dependencies across 
modules that it is too easy to get caught up in avoidable problems 
when you mix versions.

OTOH this world is for the daring ...

	-hilmar

On Thursday, September 26, 2002, at 03:19 PM, Paul Boutros wrote:

> Oh, exactly the problem.  New versions of Root::Root and Root:RootI 
> from
> CVS fixed it.
>
> Much appreciated -- I didn't realize running mixed versions could be
> so problematic.
>
> Paul
>
>
> On Thu, 26 Sep 2002, Hilmar Lapp wrote:
>
>> Sounds like a version mix problem ... _load_module() is defined in
>> Bio::Root::Root, but not in 1.0.x. Which version do you run?
>>
>> 	-hilmar
>>
>> On Thursday, September 26, 2002, at 02:55 PM, Paul Boutros wrote:
>>
>>> Hi again,
>>>
>>> I've started getting an interesting SeqIO error.  Any ideas what
>>> this is?
>>>
>>> Is the statement:
>>>     eval {
>>>         $ok = $self->_load_module($module);
>>>     };
>>> Paul
>>>
>>> ===================================================================
>>> use Bio::SeqIO;
>>> $in  = Bio::SeqIO->new(-file => "test.fasta" , '-format' => 'Fasta');
>>>
>>> ===================================================================
>>> Name "main::in" used only once: possible typo at localblast.pl 
>>> line 4.
>>> Bio::SeqIO: fasta cannot be found
>>> Exception Can't locate object method "_load_module" via package
>>> "Bio::SeqIO" (pe
>>> rhaps you forgot to load "Bio::SeqIO"?) at
>>> C:/Perl/site/lib/Bio/SeqIO.pm
>>> line 51
>>> 7.
>>>
>>> For more information about the SeqIO system please see the SeqIO 
>>> docs.
>>> This includes ways of checking for formats at compile time, not run
>>> time
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l@bioperl.org
>>> http://bioperl.org/mailman/listinfo/bioperl-l
>>>
>> --
>> -------------------------------------------------------------
>> Hilmar Lapp                            email: lapp at gnf.org
>> GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
>> -------------------------------------------------------------
>>
>
>
--
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
-------------------------------------------------------------