[Bioperl-l] Question

[Perl yang]

I am trying to write one. Can I use perl to achieve
it? Or do I have to use the NCBI toolkit? Does anyone
have any suggestions about which functions in the NCBI
toolkit that I should use? Or can anybody build a new
fuction for that? That will be greatly helpful. 

Thank you very much.

Peter Yang


--- Jason Stajich <jason@cgt.mc.duke.edu> wrote:
> It can't be done right now.
> 
> Eventually when someone wants to write the hook into
> Entrez query system
> this will be possible - will need a new function for
> this.  Should be
> quite simple but it requires a 2-query system where
> you send the Entrez
> query and get a list of GIs and then a subsequence
> query to get the
> sequence information.  Our current retrieval model
> assumes sequence
> identifiers as queries and gets back a set of
> sequences.
> 
> -jason
> 
> On Mon, 16 Sep 2002, Perl yang wrote:
> 
> > Hi,
> >
> > I want to use Bio::DB::GenBank to retrieve
> Sequence by
> > name, eg. "ribonucleoside reductase". There are
> only
> >
> > $get_Seq_by_id, get_Seq_by_acc,
> get_Seq_by_version,
> > and get_Seq_by_gi('405830').
> >
> > How can I retrieve it by name. I don't want to use
> the
> > www way.
> >
> > Any suggestions? Thank you.
> >
> >
> >
> > __________________________________________________
> > Do you Yahoo!?
> > Yahoo! News - Today's headlines
> > http://news.yahoo.com
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l@bioperl.org
> > http://bioperl.org/mailman/listinfo/bioperl-l
> >
> 
> -- 
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
> 
> 


__________________________________________________
Do you Yahoo!?
Yahoo! News - Today's headlines
http://news.yahoo.com