September 2006 Archives by author

• Messages sorted by: [ thread ] [ subject ] [ date ]
• More info on this list...

Starting: Fri Sep 1 00:00:59 UTC 2006
Ending: Sat Sep 30 23:35:24 UTC 2006
Messages: 553

• [Bioperl-l] Question from HOWTO:Beginner-Bioperl   liugai at 126.com
• [Bioperl-l] A problem with Bio::DB::Query::GenBank   liugai at 126.com
• [Bioperl-l] generate ptt file from Genbank file   Rafi Ahmad
• [Bioperl-l] generate ptt file from Genbank file   Rafi Ahmad
• [Bioperl-l] NEED HELP URGENTLY   Simon Andrews
• [Bioperl-l] SiteMatrix changes   Sendu Bala
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Sendu Bala
• [Bioperl-l] standalone blast won't work   Sendu Bala
• [Bioperl-l] Taxonomy and entrez   Sendu Bala
• [Bioperl-l] Taxonomy and entrez   Sendu Bala
• [Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails   Sendu Bala
• [Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails   Sendu Bala
• [Bioperl-l] min. perl ver. for next release, was Bioperl tests   Sendu Bala
• [Bioperl-l] t/SeqIO.t -- improvements?   Sendu Bala
• [Bioperl-l] t/SeqIO.t -- improvements?   Sendu Bala
• [Bioperl-l] removing redundant accession numbers   Sendu Bala
• [Bioperl-l] TFBS databases, Bio::Matrix::PSM suitable?   Sendu Bala
• [Bioperl-l] A problem with Bio::DB::Query::GenBank   Sendu Bala
• [Bioperl-l] Cleanup of BioPerl distribution website   Sendu Bala
• [Bioperl-l] failed install Bioperl on linux   Sendu Bala
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Sendu Bala
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Sendu Bala
• [Bioperl-l] Optional 'circular dependency' ok?   Sendu Bala
• [Bioperl-l] Optional 'circular dependency' ok?   Sendu Bala
• [Bioperl-l] Optional 'circular dependency' ok?   Sendu Bala
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Sendu Bala
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Sendu Bala
• [Bioperl-l] Optional 'circular dependency' ok?   Sendu Bala
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Sendu Bala
• [Bioperl-l] Questions about doc.bioperl.org PDOC   Sendu Bala
• [Bioperl-l] Package status for 1.5.2   Sendu Bala
• [Bioperl-l] Package status for 1.5.2   Sendu Bala
• [Bioperl-l] Package status for 1.5.2   Sendu Bala
• [Bioperl-l] Package status for 1.5.2   Sendu Bala
• [Bioperl-l] Failed tests for FeatureIO   Sendu Bala
• [Bioperl-l] Failed tests for FeatureIO   Sendu Bala
• [Bioperl-l] Package status for 1.5.2   Sendu Bala
• [Bioperl-l] bioperl-network t/IO_psi.t random failure   Sendu Bala
• [Bioperl-l] WinXP test results   Sendu Bala
• [Bioperl-l] dependencies in Makefile.PL   Sendu Bala
• [Bioperl-l] dependencies in Makefile.PL   Sendu Bala
• [Bioperl-l] Package status for 1.5.2   Sendu Bala
• [Bioperl-l] Package status for 1.5.2   Sendu Bala
• [Bioperl-l] WinXP test results   Sendu Bala
• [Bioperl-l] dependencies in Makefile.PL   Sendu Bala
• [Bioperl-l] Simplifications now possible with Perl 5.6.1 requirement?   Sendu Bala
• [Bioperl-l] Web server down?   Sendu Bala
• [Bioperl-l] Creating PPD's from CPAN Bundles   Sendu Bala
• [Bioperl-l] Simplifications now possible with Perl 5.6.1 requirement?   Sendu Bala
• [Bioperl-l] 1.5.2-c WinXP test results   Sendu Bala
• [Bioperl-l] using %packages in Makefile.PL   Sendu Bala
• [Bioperl-l] using %packages in Makefile.PL   Sendu Bala
• [Bioperl-l] Test my bioperl 1.5.2-c PPD   Sendu Bala
• [Bioperl-l] PrimarySeq POD changes   Sendu Bala
• [Bioperl-l] PrimarySeq POD changes   Sendu Bala
• [Bioperl-l] Do we need Bio::Root::Object anymore?   Sendu Bala
• [Bioperl-l] Failing tests, was Re: Simplifications now possible with Perl 5.6.1requirement?   Sendu Bala
• [Bioperl-l] Anything more for 1.5.2?   Sendu Bala
• [Bioperl-l] Anything more for 1.5.2?   Sendu Bala
• [Bioperl-l] Tests involving remote databases   Sendu Bala
• [Bioperl-l] drawing chromosome ideograms   Benoit Ballester
• [Bioperl-l] Write a fasta file with custom title line.   Siddhartha Basu
• [Bioperl-l] ensembl perl API - very slow retrival of data?   Ewan Birney
• [Bioperl-l] drawing chromosome ideograms   Richard Birnie
• [Bioperl-l] drawing chromosome ideograms   Richard Birnie
• [Bioperl-l] Bio::DB::SeqFeature   Blanchette, Marco
• [Bioperl-l] ClustalW alignment and Bioperl::Run module   Kevin Brown
• [Bioperl-l] Bio::Graphics::Glyph->parts differences between 1.636 and 1.654   Oliver Burren
• [Bioperl-l] Bio::Graphics::Glyph->parts differences between 1.636 and 1.654   Oliver Burren
• [Bioperl-l] Installation Failed Tests   Massimo Campitelli
• [Bioperl-l] sequence object with no sequence data   Roy Chaudhuri
• [Bioperl-l] slow parsing and slow debugging in PDB parsing object   Sang Chul Choi
• [Bioperl-l] Any way to figure out a changed SwissProt ID?   Sang Chul Choi
• [Bioperl-l] A failure to fetch a sequence   Sang Chul Choi
• [Bioperl-l] t/SeqIO.t -- improvements?   Cook, Malcolm
• [Bioperl-l] DNA sequence assembly for SNP analysis   Cook, Malcolm
• [Bioperl-l] Aligned Fasta file to Phylip conversion   Michael Craige
• [Bioperl-l] Cvs update tests fail   Mauricio Herrera Cuadra
• [Bioperl-l] reactive bioperl developer account   Mauricio Herrera Cuadra
• [Bioperl-l] Cleanup of BioPerl distribution website   Mauricio Herrera Cuadra
• [Bioperl-l] Cleanup of BioPerl distribution website   Mauricio Herrera Cuadra
• [Bioperl-l] Cleanup of BioPerl distribution website   Mauricio Herrera Cuadra
• [Bioperl-l] Cleanup of BioPerl distribution website   Mauricio Herrera Cuadra
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Mauricio Herrera Cuadra
• [Bioperl-l] Optional 'circular dependency' ok?   Mauricio Herrera Cuadra
• [Bioperl-l] Optional 'circular dependency' ok?   Mauricio Herrera Cuadra
• [Bioperl-l] Optional 'circular dependency' ok?   Mauricio Herrera Cuadra
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Mauricio Herrera Cuadra
• [Bioperl-l] Questions about doc.bioperl.org PDOC   Mauricio Herrera Cuadra
• [Bioperl-l] Questions about doc.bioperl.org PDOC   Mauricio Herrera Cuadra
• [Bioperl-l] Are Bio::DB::XEMBL and Bio::DB::XEMBLService still valid?   Mauricio Herrera Cuadra
• [Bioperl-l] Are Bio::DB::XEMBL and Bio::DB::XEMBLService still valid?   Mauricio Herrera Cuadra
• [Bioperl-l] Web server down?   Mauricio Herrera Cuadra
• [Bioperl-l] Bio::Tools::Blast POD needs updating   Mauricio Herrera Cuadra
• [Bioperl-l] Bio::Tools::Blast POD needs updating   Mauricio Herrera Cuadra
• [Bioperl-l] Are Bio::DB::XEMBL and Bio::DB::XEMBLService still valid?   Mauricio Herrera Cuadra
• [Bioperl-l] Are Bio::DB::XEMBL and Bio::DB::XEMBLService still valid?   Mauricio Herrera Cuadra
• [Bioperl-l] Bptutorial.pl removed   Mauricio Herrera Cuadra
• [Bioperl-l] Anything more for 1.5.2?   Mauricio Herrera Cuadra
• [Bioperl-l] Do we need Bio::Root::Object anymore?   Mauricio Herrera Cuadra
• [Bioperl-l] trouble with pairwise_kaks.PLS on Cygwin/XP platform   Caleb Davis
• [Bioperl-l] trouble with pairwise_kaks.PLS on Cygwin/XP platform   Caleb Davis
• [Bioperl-l] about PAML running within bioperl + bp_pairwise_kaks.pl   Caleb Davis
• [Bioperl-l] trouble with pairwise_kaks.PLS on Cygwin/XP platform   Caleb F. Davis
• [Bioperl-l] UCSC database backend   Sean Davis
• [Bioperl-l] Bioperl Module for Computing Background Distributions   Sean Davis
• [Bioperl-l] Problem retrieving CDS by Acession #   Sean Davis
• [Bioperl-l] Problem retrieving CDS by Acession #   Sean Davis
• [Bioperl-l] Problem retrieving CDS by Acession #   Sean Davis
• [Bioperl-l] drawing chromosome ideograms   Sean Davis
• [Bioperl-l] Bioperl Module for Computing Background Distributions   Wijaya Edward
• [Bioperl-l] Meaning of Scores and Sample code for Bio::Matrix::Scoring   Wijaya Edward
• [Bioperl-l] ensembl perl API - very slow retrival of data?   Tim Erwin
• [Bioperl-l] parsing protein accession numbers and types from >fasta headers   Antonio Ramos Fernández
• [Bioperl-l] Write a fasta file with custom title line.   Chris Fields
• [Bioperl-l] NEED HELP URGENTLY   Chris Fields
• [Bioperl-l] NEED HELP URGENTLY   Chris Fields
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Chris Fields
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Chris Fields
• [Bioperl-l] min. perl ver. for next release, was Bioperl tests   Chris Fields
• [Bioperl-l] Taxonomy and entrez   Chris Fields
• [Bioperl-l] Taxonomy and entrez   Chris Fields
• [Bioperl-l] Taxonomy and entrez   Chris Fields
• [Bioperl-l] (completely OT) Dr. Ewan Birney on BMC   Chris Fields
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Chris Fields
• [Bioperl-l] min. perl ver. for next release, was Bioperl tests   Chris Fields
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Chris Fields
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Chris Fields
• [Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails   Chris Fields
• [Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails   Chris Fields
• [Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails   Chris Fields
• [Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails   Chris Fields
• [Bioperl-l] Bioperl Module for Computing Background Distributions   Chris Fields
• [Bioperl-l] Bio::Location::Fuzzy CoordinatePolicy questions   Chris Fields
• [Bioperl-l] Problem retrieving CDS by Acession #   Chris Fields
• [Bioperl-l] Problem retrieving CDS by Acession #   Chris Fields
• [Bioperl-l] t/SeqIO.t -- improvements?   Chris Fields
• [Bioperl-l] Bio::Location::Fuzzy CoordinatePolicy questions   Chris Fields
• [Bioperl-l] Cvs update tests fail   Chris Fields
• [Bioperl-l] t/SeqIO.t -- improvements?   Chris Fields
• [Bioperl-l] removing redundant accession numbers   Chris Fields
• [Bioperl-l] Length of a sequence.   Chris Fields
• [Bioperl-l] A Bioperl problem   Chris Fields
• [Bioperl-l] bioperl installation on fedora core 5   Chris Fields
• [Bioperl-l] Blast temporary open files not closed   Chris Fields
• [Bioperl-l] TFBS databases, Bio::Matrix::PSM suitable?   Chris Fields
• [Bioperl-l] TFBS databases, Bio::Matrix::PSM suitable?   Chris Fields
• [Bioperl-l] Blast temporary open files not closed   Chris Fields
• [Bioperl-l] Test::Simple now in Bioperl   Chris Fields
• [Bioperl-l] Bio::SeqIO -- add an ugly but fast grep hack?   Chris Fields
• [Bioperl-l] parsing protein accession numbers and types from>fasta headers   Chris Fields
• [Bioperl-l] A failure to fetch a sequence   Chris Fields
• [Bioperl-l] More on PDB and chains...   Chris Fields
• [Bioperl-l] More on PDB and chains...   Chris Fields
• [Bioperl-l] problem with installation of Bioperl1.4 on Windows XPPC using ActivePerl PPM   Chris Fields
• [Bioperl-l] Cleanup of BioPerl distribution website   Chris Fields
• [Bioperl-l] Cleanup of BioPerl distribution website   Chris Fields
• [Bioperl-l] correction to docs for Bio::SearchIO::axt   Chris Fields
• [Bioperl-l] correction to docs for Bio::SearchIO::axt   Chris Fields
• [Bioperl-l] Cleanup of BioPerl distribution website   Chris Fields
• [Bioperl-l] Cleanup of BioPerl distribution website   Chris Fields
• [Bioperl-l] Cleanup of BioPerl distribution website   Chris Fields
• [Bioperl-l] Cleanup of BioPerl distribution website   Chris Fields
• [Bioperl-l] DNA sequence assembly for SNP analysis   Chris Fields
• [Bioperl-l] Cleanup of BioPerl distribution website   Chris Fields
• [Bioperl-l] Cleanup of BioPerl distribution website   Chris Fields
• [Bioperl-l] Bio::Location::Split question   Chris Fields
• [Bioperl-l] failed install Bioperl on linux   Chris Fields
• [Bioperl-l] Downloading multiple contigs using bioperl   Chris Fields
• [Bioperl-l] Bio::Location::Split question   Chris Fields
• [Bioperl-l] Bio::Location::Split question   Chris Fields
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Chris Fields
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Chris Fields
• [Bioperl-l] Optional 'circular dependency' ok?   Chris Fields
• [Bioperl-l] FW: BioPerl SeqIO-like system in BioPython   Chris Fields
• [Bioperl-l] Optional 'circular dependency' ok?   Chris Fields
• [Bioperl-l] Bioperl 1.5.2 Prerequisites   Chris Fields
• [Bioperl-l] Blast Parser Error   Chris Fields
• [Bioperl-l] Optional 'circular dependency' ok?   Chris Fields
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Chris Fields
• [Bioperl-l] Optional 'circular dependency' ok?   Chris Fields
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Chris Fields
• [Bioperl-l] The results of your email commands   Chris Fields
• [Bioperl-l] Conversion of EMBL format flat file to GFF format flatfile   Chris Fields
• [Bioperl-l] Optional 'circular dependency' ok?   Chris Fields
• [Bioperl-l] problem with installation of Bioperl1.4 on Windows XPPC using ActivePerl PPM   Chris Fields
• [Bioperl-l] Optional 'circular dependency' ok?   Chris Fields
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Chris Fields
• [Bioperl-l] Optional 'circular dependency' ok?   Chris Fields
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Chris Fields
• [Bioperl-l] Optional 'circular dependency' ok?   Chris Fields
• [Bioperl-l] Optional 'circular dependency' ok?   Chris Fields
• [Bioperl-l] Bio::Location::Split question   Chris Fields
• [Bioperl-l] Unused or incomplete modules in bioperl-live   Chris Fields
• [Bioperl-l] Unused or incomplete modules in bioperl-live   Chris Fields
• [Bioperl-l] Unused or incomplete modules in bioperl-live   Chris Fields
• [Bioperl-l] Bio::Location::Split question   Chris Fields
• [Bioperl-l] problem with installation of Bioperl1.4 on Windows XPPC using ActivePerl PPM   Chris Fields
• [Bioperl-l] Inconsitency in return value ofBio::SimpleAlinment::remove_columns()   Chris Fields
• [Bioperl-l] problem with installation of Bioperl1.4 on Windows XPPC using ActivePerl PPM   Chris Fields
• [Bioperl-l] Are Bio::DB::XEMBL and Bio::DB::XEMBLService still valid?   Chris Fields
• [Bioperl-l] New Bioperl minimum Perl version -- 5.6.1 or 5.8 ?   Chris Fields
• [Bioperl-l] Package status for 1.5.2   Chris Fields
• [Bioperl-l] Are Bio::DB::XEMBL and Bio::DB::XEMBLService still valid?   Chris Fields
• [Bioperl-l] Are Bio::DB::XEMBL and Bio::DB::XEMBLService still valid?   Chris Fields
• [Bioperl-l] Failed tests for FeatureIO   Chris Fields
• [Bioperl-l] Circular dependency?   Chris Fields
• [Bioperl-l] Failed tests for FeatureIO   Chris Fields
• [Bioperl-l] Failed tests for FeatureIO   Chris Fields
• [Bioperl-l] BioPerl - ext - Installation Problem   Chris Fields
• [Bioperl-l] BerkeleyDB required for t/Registry.t   Chris Fields
• [Bioperl-l] WinXP test results   Chris Fields
• [Bioperl-l] Creating PPD's from CPAN Bundles   Chris Fields
• [Bioperl-l] BerkeleyDB required for t/Registry.t   Chris Fields
• [Bioperl-l] WinXP test results   Chris Fields
• [Bioperl-l] dependencies in Makefile.PL   Chris Fields
• [Bioperl-l] Package status for 1.5.2   Chris Fields
• [Bioperl-l] dependencies in Makefile.PL   Chris Fields
• [Bioperl-l] dependencies in Makefile.PL   Chris Fields
• [Bioperl-l] Failed tests for FeatureIO   Chris Fields
• [Bioperl-l] Package status for 1.5.2   Chris Fields
• [Bioperl-l] WinXP test results   Chris Fields
• [Bioperl-l] dependencies in Makefile.PL   Chris Fields
• [Bioperl-l] Simplifications now possible with Perl 5.6.1requirement?   Chris Fields
• [Bioperl-l] dependencies in Makefile.PL   Chris Fields
• [Bioperl-l] Creating PPD's from CPAN Bundles   Chris Fields
• [Bioperl-l] Creating PPD's from CPAN Bundles   Chris Fields
• [Bioperl-l] Creating PPD's from CPAN Bundles   Chris Fields
• [Bioperl-l] Creating PPD's from CPAN Bundles   Chris Fields
• [Bioperl-l] PPM4 PPD + server configuration   Chris Fields
• [Bioperl-l] Simplifications now possible with Perl 5.6.1requirement?   Chris Fields
• [Bioperl-l] 1.5.2-c WinXP test results   Chris Fields
• [Bioperl-l] Bio::Location::Split question   Chris Fields
• [Bioperl-l] Test my bioperl 1.5.2-c PPD   Chris Fields
• [Bioperl-l] What is Bio::LiveSeq ?   Chris Fields
• [Bioperl-l] Test my bioperl 1.5.2-c PPD   Chris Fields
• [Bioperl-l] Test my bioperl 1.5.2-c PPD   Chris Fields
• [Bioperl-l] Bio::Tools::Blast POD needs updating   Chris Fields
• [Bioperl-l] Test my bioperl 1.5.2-c PPD   Chris Fields
• [Bioperl-l] How to rename sequences in an alignment and write_alnthem   Chris Fields
• [Bioperl-l] PrimarySeq POD changes   Chris Fields
• [Bioperl-l] PrimarySeq POD changes   Chris Fields
• [Bioperl-l] PrimarySeq POD changes   Chris Fields
• [Bioperl-l] Untested modules Wiki page   Chris Fields
• [Bioperl-l] Is Bio::Root::Xref redundant?   Chris Fields
• [Bioperl-l] Untested modules Wiki page   Chris Fields
• [Bioperl-l] Simplifications now possible with Perl 5.6.1requirement?   Chris Fields
• [Bioperl-l] Error retrieving sequence from BioSQL   Chris Fields
• [Bioperl-l] Error retrieving sequence from BioSQL   Chris Fields
• [Bioperl-l] Error retrieving sequence from BioSQL   Chris Fields
• [Bioperl-l] Failing tests, was Re: Simplifications now possible with Perl 5.6.1requirement?   Chris Fields
• [Bioperl-l] Failing tests, was Re: Simplifications now possible with Perl 5.6.1requirement?   Chris Fields
• [Bioperl-l] Are Bio::DB::XEMBL and Bio::DB::XEMBLService still valid?   Chris Fields
• [Bioperl-l] Bptutorial.pl removed   Chris Fields
• [Bioperl-l] Split $BIOPERLDEBUG meanings in test scripts?   Chris Fields
• [Bioperl-l] Bptutorial.pl removed   Chris Fields
• [Bioperl-l] Bio::SeqIO -- add an ugly but fast grep hack?   Chris Fields
• [Bioperl-l] Tests involving remote databases   Chris Fields
• [Bioperl-l] Anything more for 1.5.2?   Chris Fields
• [Bioperl-l] Anything more for 1.5.2?   Chris Fields
• [Bioperl-l] Anything more for 1.5.2?   Chris Fields
• [Bioperl-l] Tests involving remote databases   Chris Fields
• [Bioperl-l] Tests involving remote databases   Chris Fields
• [Bioperl-l] Anything more for 1.5.2?   Chris Fields
• [Bioperl-l] Do we need Bio::Root::Object anymore?   Chris Fields
• [Bioperl-l] Error retrieving sequence from BioSQL   Chris Fields
• [Bioperl-l] Change in BioPerl module   Filipe Garrett
• [Bioperl-l] Help with Bio::DB::GFF   Filipe Garrett
• [Bioperl-l] Bio::DB::GFF   Filipe Garrett
• [Bioperl-l] DB::GFF   Filipe Garrett
• [Bioperl-l] Retrieving update sequence from GenBank   Ryan Golhar
• [Bioperl-l] Problem retrieving CDS by Acession #   Ryan Golhar
• [Bioperl-l] Problem retrieving CDS by Acession #   Ryan Golhar
• [Bioperl-l] Problem retrieving CDS by Acession #   Ryan Golhar
• [Bioperl-l] Cvs update tests fail   Ryan Golhar
• [Bioperl-l] Retrieving Gene Info from NCBI   Ryan Golhar
• [Bioperl-l] TFBS databases, Bio::Matrix::PSM suitable?   Maximilian Haeussler
• [Bioperl-l] TFBS databases, Bio::Matrix::PSM suitable?   Maximilian Haeussler
• [Bioperl-l] Taxonomy and entrez   Nathan Haigh
• [Bioperl-l] sequence object with no sequence data   Nathan Haigh
• [Bioperl-l] sequence object with no sequence data   Nathan Haigh
• [Bioperl-l] sequence object with no sequence data   Nathan Haigh
• [Bioperl-l] reactive bioperl developer account   Nathan Haigh
• [Bioperl-l] problem with installation of Bioperl1.4 on Windows XPPC using ActivePerl PPM   Nathan Haigh
• [Bioperl-l] problem with installation of Bioperl1.4 on Windows XPPC using ActivePerl PPM   Nathan Haigh
• [Bioperl-l] Package status for 1.5.2   Nathan Haigh
• [Bioperl-l] Bio::SEarchIO::blastxml   Nathan Haigh
• [Bioperl-l] Circular dependency?   Nathan Haigh
• [Bioperl-l] BerkeleyDB required for t/Registry.t   Nathan Haigh
• [Bioperl-l] dependencies in Makefile.PL   Nathan Haigh
• [Bioperl-l] Creating PPD's from CPAN Bundles   Nathan Haigh
• [Bioperl-l] Anything more for 1.5.2?   Nathan Haigh
• [Bioperl-l] Cleanup of BioPerl distribution website   Nathan S. Haigh
• [Bioperl-l] Cleanup of BioPerl distribution website   Nathan S. Haigh
• [Bioperl-l] Cleanup of BioPerl distribution website   Nathan S. Haigh
• [Bioperl-l] Bioperl 1.5.2 Prerequisites   Nathan S. Haigh
• [Bioperl-l] Optional 'circular dependency' ok?   Nathan S. Haigh
• [Bioperl-l] Optional 'circular dependency' ok?   Nathan S. Haigh
• [Bioperl-l] problem with installation of Bioperl1.4 on Windows XPPC using ActivePerl PPM   Nathan S. Haigh
• [Bioperl-l] WinXP test results   Nathan S. Haigh
• [Bioperl-l] Creating PPD's from CPAN Bundles   Nathan S. Haigh
• [Bioperl-l] WinXP test results   Nathan S. Haigh
• [Bioperl-l] WinXP test results   Nathan S. Haigh
• [Bioperl-l] Package status for 1.5.2   Nathan S. Haigh
• [Bioperl-l] dependencies in Makefile.PL   Nathan S. Haigh
• [Bioperl-l] dependencies in Makefile.PL   Nathan S. Haigh
• [Bioperl-l] Creating PPD's from CPAN Bundles   Nathan S. Haigh
• [Bioperl-l] Web server down?   Nathan S. Haigh
• [Bioperl-l] Web server down?   Nathan S. Haigh
• [Bioperl-l] problem with installation of Bioperl1.4 on Windows XPPC using ActivePerl PPM   Nathan S. Haigh
• [Bioperl-l] Creating PPD's from CPAN Bundles   Nathan S. Haigh
• [Bioperl-l] PPM4 PPD + server configuration   Nathan S. Haigh
• [Bioperl-l] 1.5.2-c WinXP test results   Nathan S. Haigh
• [Bioperl-l] using %packages in Makefile.PL   Nathan S. Haigh
• [Bioperl-l] PPM4 PPD + server configuration   Nathan S. Haigh
• [Bioperl-l] using %packages in Makefile.PL   Nathan S. Haigh
• [Bioperl-l] using %packages in Makefile.PL   Nathan S. Haigh
• [Bioperl-l] Test my bioperl 1.5.2-c PPD   Nathan S. Haigh
• [Bioperl-l] Test my bioperl 1.5.2-c PPD   Nathan S. Haigh
• [Bioperl-l] Test my bioperl 1.5.2-c PPD   Nathan S. Haigh
• [Bioperl-l] Bptutorial.pl removed   Nathan S. Haigh
• [Bioperl-l] Anything more for 1.5.2?   Nathan S. Haigh
• [Bioperl-l] t/SeqIO.t -- improvements?   Jay Hannah
• [Bioperl-l] Bio::SeqIO -- add an ugly but fast grep hack?   Jay Hannah
• [Bioperl-l] Bio::SeqIO -- add an ugly but fast grep hack?   Jay Hannah
• [Bioperl-l] about PAML running within bioperl   zhuocheng Hou
• [Bioperl-l] More on PDB and chains...   Dave Howorth
• [Bioperl-l] Bio::Tools::Glimmer   Mark Johnson
• [Bioperl-l] Bio::Tools::Glimmer   Mark Johnson
• [Bioperl-l] Bio::Tools::Glimmer   Mark Johnson
• [Bioperl-l] Error retrieving sequence from BioSQL   Seth Johnson
• [Bioperl-l] Error retrieving sequence from BioSQL   Seth Johnson
• [Bioperl-l] Error retrieving sequence from BioSQL   Seth Johnson
• [Bioperl-l] Error retrieving sequence from BioSQL   Seth Johnson
• [Bioperl-l] Error retrieving sequence from BioSQL   Seth Johnson
• [Bioperl-l] Error retrieving sequence from BioSQL   Seth Johnson
• [Bioperl-l] Error retrieving sequence from BioSQL   Seth Johnson
• [Bioperl-l] Error retrieving sequence from BioSQL   Seth Johnson
• [Bioperl-l] Write a fasta file with custom title line.   Amir Karger
• [Bioperl-l] Bio::SeqIO -- add an ugly but fast grep hack?   Amir Karger
• [Bioperl-l] DNA sequence assembly for SNP analysis   Thomas J Keller
• [Bioperl-l] Conversion of EMBL format flat file to GFF format flat file   Krys Kelly
• [Bioperl-l] BioPerl - ext - Installation Problem   Shameer Khadar
• [Bioperl-l] BioPerl - ext - Installation Problem   Shameer Khadar
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Michael Kiwala
• [Bioperl-l] Entrezgene.pm $uncaptured data   Liisa Koski
• [Bioperl-l] Inconsitency in return value of Bio::SimpleAlinment::remove_columns()   Seiji Kumagai
• [Bioperl-l] Inconsitency in return value ofBio::SimpleAlinment::remove_columns()   Seiji Kumagai
• [Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails   Daniel Lang
• [Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails   Daniel Lang
• [Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails   Daniel Lang
• [Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails   Daniel Lang
• [Bioperl-l] standalone blast won't work   Carlo Lapid
• [Bioperl-l] using Bio::Structure::IO for homology models   Carlo Lapid
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Hilmar Lapp
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Hilmar Lapp
• [Bioperl-l] min. perl ver. for next release, was Bioperl tests   Hilmar Lapp
• [Bioperl-l] Taxonomy and entrez   Hilmar Lapp
• [Bioperl-l] Bio::Location::Fuzzy CoordinatePolicy questions   Hilmar Lapp
• [Bioperl-l] t/SeqIO.t -- improvements?   Hilmar Lapp
• [Bioperl-l] removing redundant accession numbers   Hilmar Lapp
• [Bioperl-l] Blast temporary open files not closed   Hilmar Lapp
• [Bioperl-l] Blast temporary open files not closed   Hilmar Lapp
• [Bioperl-l] Blast temporary open files not closed   Hilmar Lapp
• [Bioperl-l] Blast temporary open files not closed   Hilmar Lapp
• [Bioperl-l] Blast temporary open files not closed   Hilmar Lapp
• [Bioperl-l] Bug 1672 - accessing Biosql using OBDA   Hilmar Lapp
• [Bioperl-l] sequence object with no sequence data   Hilmar Lapp
• [Bioperl-l] sequence object with no sequence data   Hilmar Lapp
• [Bioperl-l] Bio::Location::Split question   Hilmar Lapp
• [Bioperl-l] Bio::Location::Split question   Hilmar Lapp
• [Bioperl-l] Bio::Tools::Glimmer   Hilmar Lapp
• [Bioperl-l] Bio::Tools::Glimmer   Hilmar Lapp
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Hilmar Lapp
• [Bioperl-l] Optional 'circular dependency' ok?   Hilmar Lapp
• [Bioperl-l] Optional 'circular dependency' ok?   Hilmar Lapp
• [Bioperl-l] Optional 'circular dependency' ok?   Hilmar Lapp
• [Bioperl-l] Optional 'circular dependency' ok?   Hilmar Lapp
• [Bioperl-l] Bio::Location::Split question   Hilmar Lapp
• [Bioperl-l] New Bioperl minimum Perl version -- 5.6.1 or 5.8 ?   Hilmar Lapp
• [Bioperl-l] Package status for 1.5.2   Hilmar Lapp
• [Bioperl-l] Package status for 1.5.2   Hilmar Lapp
• [Bioperl-l] Package status for 1.5.2   Hilmar Lapp
• [Bioperl-l] Package status for 1.5.2   Hilmar Lapp
• [Bioperl-l] dependencies in Makefile.PL   Hilmar Lapp
• [Bioperl-l] dependencies in Makefile.PL   Hilmar Lapp
• [Bioperl-l] PrimarySeq POD changes   Hilmar Lapp
• [Bioperl-l] Error retrieving sequence from BioSQL   Hilmar Lapp
• [Bioperl-l] Tests involving remote databases   Hilmar Lapp
• [Bioperl-l] Do we need Bio::Root::Object anymore?   Hilmar Lapp
• [Bioperl-l] Error retrieving sequence from BioSQL   Hilmar Lapp
• [Bioperl-l] Error retrieving sequence from BioSQL   Hilmar Lapp
• [Bioperl-l] Tests involving remote databases   Hilmar Lapp
• [Bioperl-l] Error retrieving sequence from BioSQL   Hilmar Lapp
• [Bioperl-l] Simplifications now possible with Perl 5.6.1requirement?   Heikki Lehvaslaiho
• [Bioperl-l] Simplifications now possible with Perl 5.6.1requirement?   Heikki Lehvaslaiho
• [Bioperl-l] Failing tests, was Re: Simplifications now possible with Perl 5.6.1requirement?   Heikki Lehvaslaiho
• [Bioperl-l] Memory requirements for conversion from embl to genbank   Martin MOKREJŠ
• [Bioperl-l] Blast Parser Error   Lakshmi K Matukumalli
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   David Messina
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   David Messina
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   David Messina
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   David Messina
• [Bioperl-l] World's smallest format converter   Mike Muratet
• [Bioperl-l] The results of your email commands   Kary Ann Del Carmen Soriano Ocana
• [Bioperl-l] trouble with pairwise_kaks.PLS on Cygwin/XP platform   Brian Osborne
• [Bioperl-l] NEED HELP URGENTLY   Brian Osborne
• [Bioperl-l] trouble with pairwise_kaks.PLS on Cygwin/XP platform   Brian Osborne
• [Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails   Brian Osborne
• [Bioperl-l] Retrieving update sequence from GenBank   Brian Osborne
• [Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails   Brian Osborne
• [Bioperl-l] Entrezgene.pm $uncaptured data   Brian Osborne
• [Bioperl-l] Entrezgene.pm $uncaptured data   Brian Osborne
• [Bioperl-l] retrieval of PRELIMINARY uniprot sequences using Bio::Registry fails   Brian Osborne
• [Bioperl-l] Change in BioPerl module   Brian Osborne
• [Bioperl-l] formatdb   Brian Osborne
• [Bioperl-l] Blast temporary open files not closed   Brian Osborne
• [Bioperl-l] how to select the best hsp?   Brian Osborne
• [Bioperl-l] Retrieving Gene Info from NCBI   Brian Osborne
• [Bioperl-l] Bug 1672 - accessing Biosql using OBDA   Brian Osborne
• [Bioperl-l] Question from HOWTO:Beginner-Bioperl   Brian Osborne
• [Bioperl-l] More on PDB and chains...   Brian Osborne
• [Bioperl-l] More on PDB and chains...   Brian Osborne
• [Bioperl-l] Bio::Factory::EMBOSS synopsis   Brian Osborne
• [Bioperl-l] Aligned Fasta file to Phylip conversion   Brian Osborne
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Brian Osborne
• [Bioperl-l] Unused or incomplete modules in bioperl-live   Brian Osborne
• [Bioperl-l] Unused or incomplete modules in bioperl-live   Brian Osborne
• [Bioperl-l] Package status for 1.5.2   Brian Osborne
• [Bioperl-l] Package status for 1.5.2   Brian Osborne
• [Bioperl-l] Package status for 1.5.2   Brian Osborne
• [Bioperl-l] Package status for 1.5.2   Brian Osborne
• [Bioperl-l] Package status for 1.5.2   Brian Osborne
• [Bioperl-l] BerkeleyDB required for t/Registry.t   Brian Osborne
• [Bioperl-l] HELP: script cannot find primer3, which has been properly installed   Brian Osborne
• [Bioperl-l] bioperl-network t/IO_psi.t random failure   Brian Osborne
• [Bioperl-l] Package status for 1.5.2   Brian Osborne
• [Bioperl-l] HELP: script cannot find primer3, which has been properly installed   Brian Osborne
• [Bioperl-l] using %packages in Makefile.PL   Brian Osborne
• [Bioperl-l] What is Bio::LiveSeq ?   Brian Osborne
• [Bioperl-l] Bio::Tools::Blast POD needs updating   Brian Osborne
• [Bioperl-l] ClustalW alignment and Bioperl::Run module   Brian Osborne
• [Bioperl-l] Bptutorial.pl removed   Brian Osborne
• [Bioperl-l] Bptutorial.pl removed   Brian Osborne
• [Bioperl-l] Bptutorial.pl removed   Brian Osborne
• [Bioperl-l] Anything more for 1.5.2?   Brian Osborne
• [Bioperl-l] Error retrieving sequence from BioSQL   Brian Osborne
• [Bioperl-l] More on PDB and chains...   Jurgen Pletinckx
• [Bioperl-l] formatdb   Phil Princely
• [Bioperl-l] correction to docs for Bio::SearchIO::axt   Cathy Riemer
• [Bioperl-l] bioperl installation on fedora core 5   GeOrgE RosEnbERg
• [Bioperl-l] drawing chromosome ideograms   Remo Sanges
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Bernhard Schmalhofer
• [Bioperl-l] Downloading multiple contigs using bioperl   Schragi
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Torsten Seemann
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Torsten Seemann
• [Bioperl-l] removing redundant accession numbers   Torsten Seemann
• [Bioperl-l] generate ptt file from Genbank file   Torsten Seemann
• [Bioperl-l] generate ptt file from Genbank file   Torsten Seemann
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Torsten Seemann
• [Bioperl-l] Bio::Tools::Glimmer   Torsten Seemann
• [Bioperl-l] Bio::Tools::Glimmer   Torsten Seemann
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Torsten Seemann
• [Bioperl-l] Questions about doc.bioperl.org PDOC   Torsten Seemann
• [Bioperl-l] Unused or incomplete modules in bioperl-live   Torsten Seemann
• [Bioperl-l] Unused or incomplete modules in bioperl-live   Torsten Seemann
• [Bioperl-l] New Bioperl minimum Perl version -- 5.6.1 or 5.8 ?   Torsten Seemann
• [Bioperl-l] Failed tests for FeatureIO   Torsten Seemann
• [Bioperl-l] Failed tests for FeatureIO   Torsten Seemann
• [Bioperl-l] dependencies in Makefile.PL   Torsten Seemann
• [Bioperl-l] Simplifications now possible with Perl 5.6.1 requirement?   Torsten Seemann
• [Bioperl-l] Simplifications now possible with Perl 5.6.1 requirement?   Torsten Seemann
• [Bioperl-l] What is Bio::LiveSeq ?   Torsten Seemann
• [Bioperl-l] using %packages in Makefile.PL   Torsten Seemann
• [Bioperl-l] Bio::Tools::Blast POD needs updating   Torsten Seemann
• [Bioperl-l] Is Bio::Root::Xref redundant?   Torsten Seemann
• [Bioperl-l] Untested modules Wiki page   Torsten Seemann
• [Bioperl-l] Bptutorial.pl removed   Torsten Seemann
• [Bioperl-l] Split $BIOPERLDEBUG meanings in test scripts?   Torsten Seemann
• [Bioperl-l] Do we need Bio::Root::Object anymore?   Torsten Seemann
• [Bioperl-l] Write a fasta file with custom title line.   Staffa, Nick (NIH/NIEHS) [C]
• [Bioperl-l] Length of a sequence.   Staffa, Nick (NIH/NIEHS) [C]
• [Bioperl-l] correction to docs for Bio::SearchIO::axt   Jason Stajich
• [Bioperl-l] Blast Parser Error   Jason Stajich
• [Bioperl-l] PrimarySeq POD changes   Jason Stajich
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Lincoln Stein
• [Bioperl-l] Bioperl tests: Test, Test::Simple, Test::More?   Lincoln Stein
• [Bioperl-l] Cvs update tests fail   Lincoln Stein
• [Bioperl-l] Help with Bio::DB::GFF   Lincoln Stein
• [Bioperl-l] Help with Bio::DB::GFF   Lincoln Stein
• [Bioperl-l] Bio::DB::GFF   Lincoln Stein
• [Bioperl-l] Bio::Graphics::Glyph->parts differences between 1.636 and 1.654   Lincoln Stein
• [Bioperl-l] Bio::Graphics::Glyph->parts differences between 1.636 and 1.654   Lincoln Stein
• [Bioperl-l] Bio::Graphics::Glyph->parts differences between 1.636 and 1.654   Lincoln Stein
• [Bioperl-l] DB::GFF   Lincoln Stein
• [Bioperl-l] bioperl-live: audit of FIXME/???/TODO/etc and undef/die   Lincoln Stein
• [Bioperl-l] Bio::Graphics   Lincoln Stein
• [Bioperl-l] Bio::Graphics   Lincoln Stein
• [Bioperl-l] Simplifications now possible with Perl 5.6.1 requirement?   Lincoln Stein
• [Bioperl-l] How to rename sequences in an alignment and write_aln them   Albert Vilella
• [Bioperl-l] Bio::Factory::EMBOSS synopsis   Bernd Web
• [Bioperl-l] parsing protein accession numbers and types from >fasta headers   Bernd Web
• [Bioperl-l] More on PDB and chains...   Bernd Web
• [Bioperl-l] Bio::Factory::EMBOSS synopsis   Bernd Web
• [Bioperl-l] Bio::Factory::EMBOSS synopsis   Bernd Web
• [Bioperl-l] More on PDB and chains...   Bernd Web
• [Bioperl-l] More on PDB and chains...   Bernd Web
• [Bioperl-l] More on PDB and chains...   Bernd Web
• [Bioperl-l] More on PDB and chains...   Bernd Web
• [Bioperl-l] EMBOSS die/warn   Bernd Web
• [Bioperl-l] Bptutorial.pl removed   Bernd Web
• [Bioperl-l] NEED HELP URGENTLY   Adam Woolfe
• [Bioperl-l] (no subject)   Philip Yang
• [Bioperl-l] DNA sequence assembly for SNP analysis   Fausto Rodríguez Zapata
• [Bioperl-l] FASTA parsing   simona bazzocchi
• [Bioperl-l] A Bioperl problem   dulebl at blic.net
• [Bioperl-l] failed install Bioperl on linux   zchou at cau.edu.cn
• [Bioperl-l] Blast temporary open files not closed   ende
• [Bioperl-l] Blast temporary open files not closed   ende
• [Bioperl-l] Blast temporary open files not closed   ende
• [Bioperl-l] Blast temporary open files not closed   ende
• [Bioperl-l] Blast temporary open files not closed   ende
• [Bioperl-l] Bioperl - deprecate Bio/Search/Processor ?   aaron.j.mackey at gsk.com
• [Bioperl-l] ensembl perl API - very slow retrival of data?   zhihua li
• [Bioperl-l] HELP: script cannot find primer3, which has been properly installed   zhihua li
• [Bioperl-l] HELP: script cannot find primer3, which has been properly installed   zhihua li
• [Bioperl-l] HELP: script cannot find primer3, which has been properly instal   zhihua li
• [Bioperl-l] removing redundant accession numbers   kamesh narasimhan
• [Bioperl-l] removing redundant accession numbers   kamesh narasimhan
• [Bioperl-l] removing redundant accession numbers   kamesh narasimhan
• [Bioperl-l] Bug in method "slice" of Bio::SimpleAlign   phil-
• [Bioperl-l] Bioperl Module for Computing Background Distributions   pierre
• [Bioperl-l] how to select the best hsp?   sergei ryazansky
• [Bioperl-l] how to select the best hsp?   sergei ryazansky
• [Bioperl-l] how to select the best hsp?   sergei ryazansky
• [Bioperl-l] how to select the best hsp?   sergei ryazansky
• [Bioperl-l] using the libgd library   sergei ryazansky
• [Bioperl-l] Bio::Graphics   sergei ryazansky
• [Bioperl-l] Bio::Graphics   sergei ryazansky
• [Bioperl-l] Web server down?   sergei ryazansky
• [Bioperl-l] A failure to fetch a sequence   smarkel at scitegic.com
• [Bioperl-l] A failure to fetch a sequence   smarkel at scitegic.com
• [Bioperl-l] Bio::Factory::EMBOSS synopsis   smarkel at scitegic.com
• [Bioperl-l] SiteMatrix changes   skirov
• [Bioperl-l] Length of a sequence.   skirov
• [Bioperl-l] Length of a sequence.   skirov
• [Bioperl-l] failed install Bioperl on linux   skirov
• [Bioperl-l] NEED HELP URGENTLY   neeti somaiya
• [Bioperl-l] CN=Deb Groskreutz/OU=MSN/O=TWT is out of the office.   DGroskreutz at twt.com
• [Bioperl-l] problems for installing Bioperl 1.4   szhan at uoguelph.ca
• [Bioperl-l] problem with installation of Bioperl1.4 on Windows XP PC using ActivePerl PPM   szhan at uoguelph.ca
• [Bioperl-l] problem with installation of Bioperl1.4 on Windows XPPC using ActivePerl PPM   szhan at uoguelph.ca
• [Bioperl-l] drawing chromosome ideograms   Guðmundur Árni Þórisson

Last message date: Sat Sep 30 23:35:24 UTC 2006
Archived on: Mon Jun 16 02:47:38 UTC 2014

• Messages sorted by: [ thread ] [ subject ] [ date ]
• More info on this list...