[Bioperl-l] Problem retrieving CDS by Acession #

Ryan Golhar golharam at umdnj.edu
Thu Sep 7 05:09:20 UTC 2006


I'm using Bio::DB::GenBank::get_Seq_by_acc() passing in a valid
accession #, XM_547879.2, for instance.

I get the message in return:

-------------------- WARNING ---------------------
MSG: acc (gb|XM_547879.2) does not exist

If I go to NCBI, and enter the accession, the GenBank entry comes up.
At first I suspected it was the version number, but removing the version
number still causes the same error.

Am I doing something wrong?


More information about the Bioperl-l mailing list