February 2003 Archives by subject

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Starting: Sat Feb 1 11:21:45 EDT 2003
Ending: Fri Feb 28 16:41:51 EDT 2003
Messages: 394

• [Bioperl-l] [Bioperl-guts-l] any module (class) to run or parse the results of RPS-BLAST? (fwd)   Jason Stajich
• [Bioperl-l] Error in tempfile() using /tmp/XXXXXXXXXX: Could not create temp /usr/local/lib/perl5/site_perl/5.8.0/Bio/Root/IO.pm line 473   Samuel Andersson
• [Bioperl-l] Group Leader Positions in Singapore, Temasek Life Sciences Laboratory   Elia Stupka
• [Bioperl-l] Re: changing subfeature colors with Bio::Graphics and Bio::SeqFeature   Lincoln Stein
• [Bioperl-l] Urgent O|B|F system news: our primary developer repository has been relocated   Chris Dagdigian
• [Bioperl-l] Using Bio::SearchIO was: StandAloneBlast returning Bio::SearchIO::blast   Dan Kortschak
• [Bioperl-l] Using Bio::SearchIO was: StandAloneBlast returning Bio::SearchIO::blast   Jason Stajich
• [Bioperl-l] 1.2.1 next week   Ewan Birney
• [Bioperl-l] 1.2.1 next week   Hilmar Lapp
• [Bioperl-l] 1.2.1 next week   Jason Stajich
• [Bioperl-l] about fgenesh result manipunation   Magic Fang
• [Bioperl-l] about the gc% plotting   Lincoln Stein
• [Bioperl-l] about the gc% plotting   Magic Fang
• [Bioperl-l] about the gc% plotting   Lincoln Stein
• [Bioperl-l] about the gc% plotting   Paul Edlefsen
• [Bioperl-l] ACC -> Organism question   Wiepert, Mathieu
• [Bioperl-l] ACC -> Organism question   Henrik Nilsson
• [Bioperl-l] ACC -> Organism question   Jason Stajich
• [Bioperl-l] Again, boxes in heterogenious segments   Marco Aurelio Valtas Cunha
• [Bioperl-l] Again, boxes in heterogenious segments   Lincoln Stein
• [Bioperl-l] another use of Perl for biology   Guillaume Rousse
• [Bioperl-l] another use of Perl for biology   Heikki Lehvaslaiho
• [Bioperl-l] another use of Perl for biology   Guillaume Rousse
• [Bioperl-l] Assessing the features of MSA in fasta format   Vladimir Babenko
• [Bioperl-l] best way to map ESTs to genomic seq: blastn?   Qunfeng Dong
• [Bioperl-l] best way to map ESTs to genomic seq: blastn?   Charles Hauser
• [Bioperl-l] best way to map ESTs to genomic seq: blastn?   Lincoln Stein
• [Bioperl-l] best way to map ESTs to genomic seq: blastn?   Leonardo Marino-Ramirez
• [Bioperl-l] Bio::Coordinate mappers   Heikki Lehvaslaiho
• [Bioperl-l] Bio::DB::GenBank problem with get_Seq_by_acc   Prachi Shah
• [Bioperl-l] Bio::DB::GenPept server error   Ewan Birney
• [Bioperl-l] Bio::DB::GenPept server error   Neil Saunders
• [Bioperl-l] Bio::Graphics and HTML   William Boileau
• [Bioperl-l] Bio::Graphics and HTML   Bernhard Schmalhofer
• [Bioperl-l] Bio::Graphics heterogeneous_segments problem.   Marco Aurelio Valtas Cunha
• [Bioperl-l] Bio::Graphics heterogeneous_segments problem.   Lincoln Stein
• [Bioperl-l] Bio::Graphics heterogeneous_segments problem.   Lincoln Stein
• [Bioperl-l] Bio::Graphics heterogeneous_segments problem.   Lincoln Stein
• [Bioperl-l] Bio::Graphics heterogeneous_segments problem.   Marco Aurelio Valtas Cunha
• [Bioperl-l] Bio::Graphics, sorry to sound redundant :(   William Boileau
• [Bioperl-l] Bio::Graphics::Glyph extending_arrow   William Boileau
• [Bioperl-l] Bio::Graphics::Glyph extending_arrow   Lincoln Stein
• [Bioperl-l] Bio::Ontology overhaul   Hilmar Lapp
• [Bioperl-l] Bio::Ontology overhaul   Paul Edlefsen
• [Bioperl-l] Bio::Ontology overhaul   Hilmar Lapp
• [Bioperl-l] Bio::Ontology overhaul   Hilmar Lapp
• [Bioperl-l] Bio::Ontology overhaul   Paul Edlefsen
• [Bioperl-l] Bio::Ontology overhaul   Hilmar Lapp
• [Bioperl-l] Bio::Ontology overhaul   Hilmar Lapp
• [Bioperl-l] Bio::Ontology overhaul   Chris Mungall
• [Bioperl-l] Bio::Ontology overhaul   Paul Edlefsen
• [Bioperl-l] Bio::Ontology overhaul   Hilmar Lapp
• [Bioperl-l] Bio::Ontology overhaul   Ewan Birney
• [Bioperl-l] Bio::Ontology overhaul   Aaron J Mackey
• [Bioperl-l] Bio::Ontology overhaul   Lincoln Stein
• [Bioperl-l] Bio::Ontology overhaul   Aaron J Mackey
• [Bioperl-l] Bio::Ontology overhaul   Hilmar Lapp
• [Bioperl-l] Bio::Ontology overhaul   Hilmar Lapp
• [Bioperl-l] Bio::Ontology overhaul   Chris Mungall
• [Bioperl-l] Bio::Ontology overhaul   Ewan Birney
• [Bioperl-l] Bio::Pedigree modules   Man-Suen Chan
• [Bioperl-l] Bio::Pedigree modules   Jason Stajich
• [Bioperl-l] Bio::SeqIO::genbank seems to munge SOURCE and ORGANISM lines   Geoff Purdy
• [Bioperl-l] Bio::SeqIO::genbank seems to munge SOURCE and ORGANISM lines   Hilmar Lapp
• [Bioperl-l] Bio::SeqIO::genbank seems to munge SOURCE and ORGANISM lines   Hilmar Lapp
• [Bioperl-l] Bio::SeqIO::genbank seems to munge SOURCE and ORGANISM lines   Geoff Purdy
• [Bioperl-l] Bio::Tools::SeqStat   Heikki Lehvaslaiho
• [Bioperl-l] bioperl indices   miguel valvano
• [Bioperl-l] bioperl indices   Jason Stajich
• [Bioperl-l] bioperl.pod and biodesign.pod   Hilmar Lapp
• [Bioperl-l] bioperl.pod and biodesign.pod   Brian Osborne
• [Bioperl-l] bioperl.pod and biodesign.pod   Hilmar Lapp
• [Bioperl-l] bioperl.pod and biodesign.pod   Allen Day
• [Bioperl-l] BioSQL db on Windows 2000/mySQL   Wiepert, Mathieu
• [Bioperl-l] BioSQL db on Windows 2000/mySQL   Brian Osborne
• [Bioperl-l] BioSQL release candidate   Hilmar Lapp
• [Bioperl-l] bl2seq   andersen at purdue.edu
• [Bioperl-l] bl2seq   Jason Stajich
• [Bioperl-l] Blast server: checking seq prior to job submission   Hilmar Lapp
• [Bioperl-l] Blast server: checking seq prior to job submission   Charles Hauser
• [Bioperl-l] blastall parser   Xiequn Xu
• [Bioperl-l] Boxes and features...   Lincoln Stein
• [Bioperl-l] Boxes and features...   William Boileau
• [Bioperl-l] boxes in heterogenious segments   Marco Aurelio Valtas Cunha
• [Bioperl-l] bpindex/bpfetch work for me:   Brian Osborne
• [Bioperl-l] bpindex/bpfetch work for me:   Ewan Birney
• [Bioperl-l] bpindex/bpfetch work for me:   Ewan Birney
• [Bioperl-l] bpindex/bpfetch work for me:   Wiepert, Mathieu
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Brian Osborne
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Hilmar Lapp
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Hilmar Lapp
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Brian Osborne
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Lincoln Stein
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Lincoln Stein
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Lincoln Stein
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, make bailsout   Hilmar Lapp
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, make bailsout   Brian Osborne
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, make bails out   Hilmar Lapp
• [Bioperl-l] can't retrive certain sequences from remote db   Alice Lu
• [Bioperl-l] can't retrive certain sequences from remote db   Jason Stajich
• [Bioperl-l] can't retrive certain sequences from remote db   Brian Osborne
• [Bioperl-l] can't retrive certain sequences from remote db   Alice Lu
• [Bioperl-l] combining a CGI filehandle with SeqIO   nkuipers
• [Bioperl-l] combining a CGI filehandle with SeqIO   Hilmar Lapp
• [Bioperl-l] combining a CGI filehandle with SeqIO   Jamie Hatfield (AGCoL)
• [Bioperl-l] counting nucleotides in a sequence   Jason Stajich
• [Bioperl-l] counting nucleotides in a sequence   Jason Stajich
• [Bioperl-l] counting nucleotides in a sequence   parvesh at pacific.net.sg
• [Bioperl-l] counting nucleotides in a sequence   Alan Christoffels
• [Bioperl-l] counting nucleotides in a sequence   Brian Osborne
• [Bioperl-l] cpu time contribution   Major Chai Mee Joon MajorLinux
• [Bioperl-l] dev cvs   Xiao Juguang
• [Bioperl-l] EMBOSSApplication warnings?   Wiepert, Mathieu
• [Bioperl-l] EMBOSSApplication warnings?   Hilmar Lapp
• [Bioperl-l] EMBOSSApplication warnings?   Heikki Lehvaslaiho
• [Bioperl-l] Errors using Bio::Assembly   anunberg at oriongenomics.com
• [Bioperl-l] Errors using Bio::Assembly   Robson Francisco de Souza
• [Bioperl-l] Errors using Bio::Assembly   Andy Nunberg
• [Bioperl-l] FASTA alignment encoding   William R. Pearson
• [Bioperl-l] fasta-formatted alignment used in SearchIO   Vladimir Babenko
• [Bioperl-l] fasta-formatted alignment used in SearchIO   Jason Stajich
• [Bioperl-l] ftp site down?   Kurt Marek
• [Bioperl-l] ftp site down?   Jason Stajich
• [Bioperl-l] ftp site down?   Chris Dagdigian
• [Bioperl-l] Fw: about the remote blast problem   Magic Fang
• [Bioperl-l] Fw: about the remote blast problem   Wiepert, Mathieu
• [Bioperl-l] genbank contig parses   Hilmar Lapp
• [Bioperl-l] genbank contig parses   Richard Adams
• [Bioperl-l] genbank contig parses   Richard Adams
• [Bioperl-l] gene ontology   Hilmar Lapp
• [Bioperl-l] gene ontology   Chris Mungall
• [Bioperl-l] GFF3 preliminary   Jim Kent
• [Bioperl-l] GFF3 preliminary   Ian Korf
• [Bioperl-l] GFF3 preliminary   Lincoln Stein
• [Bioperl-l] GFF3 preliminary   Lincoln Stein
• [Bioperl-l] Help with Makefile.PL   Turner, Geoff
• [Bioperl-l] Help with Makefile.PL   simon andrews (BI)
• [Bioperl-l] How access HSP fields?   Ivan Sendin
• [Bioperl-l] How access HSP fields?   nkuipers
• [Bioperl-l] How to become a bioperl hacker... (and come to hackathons)   Ewan Birney
• [Bioperl-l] HTML writers   nkuipers
• [Bioperl-l] HTML writers   nkuipers
• [Bioperl-l] HTML writers   Brian Osborne
• [Bioperl-l] if there are other docs for bioperl graphics   Magic Fang
• [Bioperl-l] if there are other docs for bioperl graphics   Elia Stupka
• [Bioperl-l] InterPro parser   Hilmar Lapp
• [Bioperl-l] introducing news.open-bio.org and new Bioperl news system   nkuipers
• [Bioperl-l] introducing news.open-bio.org and new Bioperl news system   Chris Dagdigian
• [Bioperl-l] IO::String missing   nkuipers
• [Bioperl-l] IO::String missing   Jason Stajich
• [Bioperl-l] IO::String missing   Marc Logghe
• [Bioperl-l] IO::String missing   Prachi Shah
• [Bioperl-l] IO::String missing   Jason Stajich
• [Bioperl-l] IO::String missing   Prachi Shah
• [Bioperl-l] Is dev.open-bio.org down?   Paul Edlefsen
• [Bioperl-l] Is dev.open-bio.org down?   Lincoln Stein
• [Bioperl-l] limit on accessing NCBI/GenBank   Lincoln Stein
• [Bioperl-l] limit on accessing NCBI/GenBank   Ewan Birney
• [Bioperl-l] limit on accessing NCBI/GenBank   Lincoln Stein
• [Bioperl-l] limit on accessing NCBI/GenBank   Prachi Shah
• [Bioperl-l] limit on accessing NCBI/GenBank   Nirav Merchant
• [Bioperl-l] limit on accessing NCBI/GenBank   Jason Stajich
• [Bioperl-l] limit on accessing NCBI/GenBank   Brian Osborne
• [Bioperl-l] local dialign module   Mark Wagner
• [Bioperl-l] local dialign module   Jason Stajich
• [Bioperl-l] local dialign module   Mark Wagner
• [Bioperl-l] LocusLink Parsing Problem   Paul Boutros
• [Bioperl-l] LocusLink Parsing Problem   Hilmar Lapp
• [Bioperl-l] MEME parsing   Stefan Kirov
• [Bioperl-l] Mlagan/lagan bioperl object   Ewan Birney
• [Bioperl-l] Mlagan/lagan bioperl object   Ewan Birney
• [Bioperl-l] Mlagan/lagan bioperl object   Shawn Hoon
• [Bioperl-l] Mlagan/lagan bioperl object   Ewan Birney
• [Bioperl-l] Mlagan/lagan bioperl object   Elia Stupka
• [Bioperl-l] Mlagan/lagan bioperl object   Shawn Hoon
• [Bioperl-l] Mlagan/lagan bioperl object   Stephen Montgomery
• [Bioperl-l] More on ACC NR -> Species name   Wiepert, Mathieu
• [Bioperl-l] More on ACC NR -> Species name   James Wasmuth
• [Bioperl-l] More on ACC NR -> Species name   Ewan Birney
• [Bioperl-l] More on ACC NR -> Species name   Henrik Nilsson
• [Bioperl-l] More on ACC NR -> Species name   Hilmar Lapp
• [Bioperl-l] Need help updating Bio::Graphics regression tests   Lincoln Stein
• [Bioperl-l] Newbie StandAloneBlast - too many files?   Keith Anthony Boroevich
• [Bioperl-l] Newbie StandAloneBlast - too many files?   Brian Osborne
• [Bioperl-l] Newbie StandAloneBlast - too many files?   Jason Stajich
• [Bioperl-l] Newbie StandAloneBlast - too many files?   Keith Boroevich
• [Bioperl-l] Newbie StandAloneBlast - too many files?   Jason Stajich
• [Bioperl-l] Newbie Question about Bio::DB::GenBank   Joseph Urban
• [Bioperl-l] Newbie Question about Bio::DB::GenBank   nkuipers
• [Bioperl-l] OBDA Bioperl Documentation   Peter Schattner
• [Bioperl-l] OBDA Bioperl Documentation   Lincoln Stein
• [Bioperl-l] Official bio hackathon website   Nathan Torkington
• [Bioperl-l] Official bio hackathon website   Jason Stajich
• [Bioperl-l] Official bio hackathon website   Xiao Juguang
• [Bioperl-l] Official bio hackathon website   Elia Stupka
• [Bioperl-l] Old BPlite::HSP methods   Michael Muratet
• [Bioperl-l] Old BPlite::HSP methods   Ian Korf
• [Bioperl-l] oligo_count script   Heikki Lehvaslaiho
• [Bioperl-l] ontology changes   Hilmar Lapp
• [Bioperl-l] Parsing GenBank files w/o Sequences   Peter Chines
• [Bioperl-l] Parsing GenBank files w/o Sequences   Hilmar Lapp
• [Bioperl-l] Parsing GenBank files w/o Sequences   Hilmar Lapp
• [Bioperl-l] Parsing GenBank files w/o Sequences   Ewan Birney
• [Bioperl-l] parsing of keywords field in Bio::SeqIO::genbank   Geoff Purdy
• [Bioperl-l] parsing of keywords field in Bio::SeqIO::genbank   Hilmar Lapp
• [Bioperl-l] parsing of keywords field in Bio::SeqIO::genbank   Geoff Purdy
• [Bioperl-l] perl api for xml database   John Merrells
• [Bioperl-l] pI and MW of seqs   Rob Edwards
• [Bioperl-l] pI and MW of seqs   Aaron J Mackey
• [Bioperl-l] pI and MW of seqs   Brian Osborne
• [Bioperl-l] pI and MW of seqs   Hilmar Lapp
• [Bioperl-l] Please help with Bio::Graphics   Lucas Quincy Ton
• [Bioperl-l] Please help with Bio::Graphics   Jason Stajich
• [Bioperl-l] Please help with Bio::Graphics   Lincoln Stein
• [Bioperl-l] plenty of tests fail on the main trunk   Hilmar Lapp
• [Bioperl-l] plenty of tests fail on the main trunk   Hilmar Lapp
• [Bioperl-l] plenty of tests fail on the main trunk   Jason Stajich
• [Bioperl-l] plenty of tests fail on the main trunk   Jason Stajich
• [Bioperl-l] plenty of tests fail on the main trunk   Lincoln Stein
• [Bioperl-l] PostgreSQL & lookup & insert in bioperl-db   Hilmar Lapp
• [Bioperl-l] PostgreSQL & lookup & insert in bioperl-db   Charles Hauser
• [Bioperl-l] predicting secondary structure   Nigam Shah
• [Bioperl-l] predicting secondary structure   Richard Adams
• [Bioperl-l] problem with Bio::DB::Query::GenBank   Hilmar Lapp
• [Bioperl-l] problem with Bio::DB::Query::GenBank   Aaron J Mackey
• [Bioperl-l] problem with bioperl on UNIX   Prachi Shah
• [Bioperl-l] problem with bioperl on UNIX   simon andrews (BI)
• [Bioperl-l] problem with bioperl on UNIX   Prachi Shah
• [Bioperl-l] problem with bioperl on UNIX   Prachi Shah
• [Bioperl-l] problem with bioperl on UNIX   Jason Stajich
• [Bioperl-l] problem with bioperl on UNIX   Hilmar Lapp
• [Bioperl-l] problem with bioperl on UNIX   Jason Stajich
• [Bioperl-l] problem with bioperl on UNIX   Prachi Shah
• [Bioperl-l] problem with bioperl on UNIX   Hilmar Lapp
• [Bioperl-l] Problems loading scf files   Brad Powers
• [Bioperl-l] problems loading swissprot under mysql inmandrake 9.0   David Guzman
• [Bioperl-l] problems loading swissprot under mysql inmandrake 9.0   Hilmar Lapp
• [Bioperl-l] Problems with my first Bioperl Script   Brian Carlson
• [Bioperl-l] Problems with my first Bioperl Script   Aaron J Mackey
• [Bioperl-l] Problems with my first Bioperl Script   Marc Logghe
• [Bioperl-l] project ideas   Brian Osborne
• [Bioperl-l] project ideas   Jason Stajich
• [Bioperl-l] project ideas   Hilmar Lapp
• [Bioperl-l] project ideas   Richard Adams
• [Bioperl-l] Proposed name change for 1.3 (1.4)   Paul Edlefsen
• [Bioperl-l] Proposed name change for 1.3 (1.4)   Ewan Birney
• [Bioperl-l] Proposed name change for 1.3 (1.4)   Hilmar Lapp
• [Bioperl-l] Proposed name change for 1.3 (1.4)   Paul Edlefsen
• [Bioperl-l] Proposed name change for 1.3 (1.4)   Hilmar Lapp
• [Bioperl-l] Proposed name change for 1.3 (1.4)   Hilmar Lapp
• [Bioperl-l] Proposed name change for 1.3 (1.4)   Ewan Birney
• [Bioperl-l] Proposed name change for 1.3 (1.4)   Hilmar Lapp
• [Bioperl-l] Proposed name change for 1.3 (1.4)   Heikki Lehvaslaiho
• [Bioperl-l] Proposed name change for 1.3 (1.4)   Ewan Birney
• [Bioperl-l] Proposed name change for 1.3 (1.4)   Hilmar Lapp
• [Bioperl-l] Proposed name change for 1.3 (1.4)   Aaron J Mackey
• [Bioperl-l] Proposed name change for 1.3 (1.4)   Ewan Birney
• [Bioperl-l] Question about Bio::DB vs Bio::Index ...   William S. Morgart
• [Bioperl-l] Question about Bio::DB vs Bio::Index ...   Jason Stajich
• [Bioperl-l] Quickest way to get sequence....   Brian Carlson
• [Bioperl-l] Re: [Bioperl-guts-l] any module (class) to run or parse the results of RPS-BLAST?   Jason Stajich
• [Bioperl-l] Re: [Bioperl-guts-l] BioPerl::RefSeq usage   Jason Stajich
• [Bioperl-l] Re: [BioSQL-l] PostgreSQL & lookup & insert in bioperl-db   Hilmar Lapp
• [Bioperl-l] Re: [BioSQL-l] PostgreSQL & lookup & insert in bioperl-db   Thomas Down
• [Bioperl-l] Re: [BioSQL-l] PostgreSQL & lookup & insert in bioperl-db   Hilmar Lapp
• [Bioperl-l] Re: [BioSQL-l] PostgreSQL & lookup & insert in bioperl-db   Yves Bastide
• [Bioperl-l] Re: [BioSQL-l] PostgreSQL & lookup & insert in bioperl-db   Elia Stupka
• [Bioperl-l] Re: [BioSQL-l] PostgreSQL & lookup & insert in bioperl-db   Aaron J Mackey
• [Bioperl-l] Re: [BioSQL-l] PostgreSQL & lookup & insert in bioperl-db   Yves Bastide
• [Bioperl-l] Re: [BioSQL-l] PostgreSQL & lookup & insert in bioperl-db   Elia Stupka
• [Bioperl-l] Re: [SO-devel] GFF3 preliminary   Mark Yandell
• [Bioperl-l] Re: [SO-devel] GFF3 preliminary   Chris Mungall
• [Bioperl-l] Re: [SO-devel] GFF3 preliminary   Ewan Birney
• [Bioperl-l] Re: [SO-devel] GFF3 preliminary   Lincoln Stein
• [Bioperl-l] Re: [SO-devel] GFF3 preliminary   Michael Ashburner (Genetics)
• [Bioperl-l] Re: [SO-devel] Re: GFF3 preliminary   Lincoln Stein
• [Bioperl-l] Re: [SO-devel] Re: GFF3 preliminary   Chris Mungall
• [Bioperl-l] Re: [SO-devel] Re: GFF3 preliminary   Chris Mungall
• [Bioperl-l] Re: [SO-devel] Re: GFF3 preliminary   Richard Durbin
• [Bioperl-l] Re: [SO-devel] Re: GFF3 preliminary   Richard Durbin
• [Bioperl-l] Re: counting nucleotides in a sequence   Mark Wagner
• [Bioperl-l] Re: counting nucleotides in a sequence   nkuipers
• [Bioperl-l] Re: GFF3 preliminary   Jim Kent
• [Bioperl-l] Re: GFF3 preliminary   Aaron J Mackey
• [Bioperl-l] Re: GFF3 preliminary   Richard Durbin
• [Bioperl-l] Re: Proposed GFF version 3   Suzanna Lewis
• [Bioperl-l] Re: Proposed GFF version 3   Ewan Birney
• [Bioperl-l] Re: Proposed GFF version 3   Jim Kent
• [Bioperl-l] Re: Proposed GFF version 3   Lincoln Stein
• [Bioperl-l] Re: Proposed GFF version 3   Richard Durbin
• [Bioperl-l] Re: Proposed GFF version 3   Lincoln Stein
• [Bioperl-l] Re: Proposed GFF version 3   Jim Kent
• [Bioperl-l] Re: Proposed GFF version 3   Jim Kent
• [Bioperl-l] Re: Proposed GFF version 3   Richard Durbin
• [Bioperl-l] Re: Proposed GFF version 3   Richard Durbin
• [Bioperl-l] RE: Proposed GFF version 3   Tony Cox
• [Bioperl-l] Re: Proposed GFF version 3   Richard Durbin
• [Bioperl-l] Re: Schedule for 1.2.1   Hilmar Lapp
• [Bioperl-l] Re: Schedule for 1.2.1   Brian Osborne
• [Bioperl-l] Remote BLAST and BLAST Word Size   Henrik Nilsson
• [Bioperl-l] Remote BLAST and BLAST Word Size   Jason Stajich
• [Bioperl-l] RemoteBlast other than NCBI.   Prachi Shah
• [Bioperl-l] RemoteBlast other than NCBI.   Jason Stajich
• [Bioperl-l] removing net dependancies   Jason Stajich
• [Bioperl-l] RepeatMask Files Saving   kaboroev at sfu.ca
• [Bioperl-l] RepeatMask Files Saving   Shawn Hoon
• [Bioperl-l] resolved: where is Bio::Tools::Run::WrapperBase.pm?   Dan Kortschak
• [Bioperl-l] Schedule for 1.2.1   Brian Osborne
• [Bioperl-l] Schedule for 1.2.1   Ewan Birney
• [Bioperl-l] script reorganising in bioperl-db   Ewan Birney
• [Bioperl-l] scripts   Brian Osborne
• [Bioperl-l] scripts   Lincoln Stein
• [Bioperl-l] scripts   Heikki Lehvaslaiho
• [Bioperl-l] SearchIO::hmmer - Missing last hit   James Wasmuth
• [Bioperl-l] SeqIO out of memory   Hilmar Lapp
• [Bioperl-l] SeqIO out of memory   Brian Osborne
• [Bioperl-l] SeqIO; writing to custom out format?   Cook, Malcolm
• [Bioperl-l] SeqIO; writing to custom out format?   Charles Hauser
• [Bioperl-l] SeqIO; writing to custom out format?   Jason Stajich
• [Bioperl-l] SeqIO; writing to custom out format?   Brian Osborne
• [Bioperl-l] SeqIO; writing to custom out format?   Charles Hauser
• [Bioperl-l] SeqIO; writing to custom out format?   Brian Osborne
• [Bioperl-l] SeqIO; writing to custom out format?   Hilmar Lapp
• [Bioperl-l] Sequence Features... (hello from Singapore...)   Ewan Birney
• [Bioperl-l] Sequence Features... (hello from Singapore...)   Paul Edlefsen
• [Bioperl-l] Sequence Features... (hello from Singapore...)   Paul Edlefsen
• [Bioperl-l] Sequence Features... (hello from Singapore...)   Hilmar Lapp
• [Bioperl-l] Sequence Features... (hello from Singapore...)   Ewan Birney
• [Bioperl-l] Sequence Features... (hello from Singapore...)   Paul Edlefsen
• [Bioperl-l] Speculative changes to Bio::Graphics   Lincoln Stein
• [Bioperl-l] SSEARCH Module needed?   Konrad Foerstner
• [Bioperl-l] SSEARCH Module needed? no. 2   Konrad Foerstner
• [Bioperl-l] SSEARCH Module needed? no. 2   Konrad Foerstner
• [Bioperl-l] SSEARCH Module needed? no. 2:   Jason Stajich
• [Bioperl-l] SSEARCH Module needed? no. 2:   Shawn Hoon
• [Bioperl-l] SSEARCH Module needed? no. 2:   Konrad Foerstner
• [Bioperl-l] StandAlone BLAST error   Arvind Jayasundar
• [Bioperl-l] StandAlone BLAST error   Tobias Thierer
• [Bioperl-l] StandAlone BLAST error   Dave Arenillas
• [Bioperl-l] StandAloneBlast and blast->to_html etc   Dan Kortschak
• [Bioperl-l] StandAloneBlast returning Bio::SearchIO::blast was: whereis Bio::Tools::Run::WrapperBase.pm?   Brian Osborne
• [Bioperl-l] StandAloneBlast returning Bio::SearchIO::blast was: where is Bio::Tools::Run::WrapperBase.pm?   Ewan Birney
• [Bioperl-l] StandAloneBlast returning Bio::SearchIO::blast was: where is Bio::Tools::Run::WrapperBase.pm?   Ewan Birney
• [Bioperl-l] StandAloneBlast returning Bio::SearchIO::blast was: where is Bio::Tools::Run::WrapperBase.pm?   Dan Kortschak
• [Bioperl-l] still problem with bioperl on UNIX   Prachi Shah
• [Bioperl-l] struggling with Bio::Index::GenBank   Brian Osborne
• [Bioperl-l] struggling with Bio::Index::GenBank   Neil Saunders
• [Bioperl-l] t/CoordinateMapper fails badly   Hilmar Lapp
• [Bioperl-l] t/CoordinateMapper fails badly   Ewan Birney
• [Bioperl-l] tables missing in mysql biosql instance   David Guzman
• [Bioperl-l] tables missing in mysql biosql instance   Hilmar Lapp
• [Bioperl-l] temp file not removed after StandAloneBlast?   Remo Sanges
• [Bioperl-l] temp file not removed after StandAloneBlast?   Ewan Birney
• [Bioperl-l] Thanks and other questions   Sally Li
• [Bioperl-l] The large module list chestnut again   Jason Stajich
• [Bioperl-l] The large module list chestnut again   Keith James
• [Bioperl-l] The large module list chestnut again   Ewan Birney
• [Bioperl-l] The large module list chestnut again   Keith James
• [Bioperl-l] tracking down error in SeqFeature Collection subroutine   Robson Francisco de Souza
• [Bioperl-l] tracking down error in SeqFeature Collection subroutine   Andy Nunberg
• [Bioperl-l] Trouble in executing StandAloneBlast on Win2000   Jason Stajich
• [Bioperl-l] Trouble in executing StandAloneBlast on Win2000   Ewan Birney
• [Bioperl-l] Trouble in executing StandAloneBlast on Win2000   Brian Osborne
• [Bioperl-l] Trouble in executing StandAloneBlast on Win2000   Takeshi Sasayama
• [Bioperl-l] Trouble in executing StandAloneBlast on Win2000   Takeshi Sasayama
• [Bioperl-l] Trouble in executing StandAloneBlast on Win2000   Takeshi Sasayama
• [Bioperl-l] urgent   allen obada
• [Bioperl-l] Using IO::Filter::gzip with Bio::SeqIO   Michael Muratet
• [Bioperl-l] Using IO::Filter::gzip with Bio::SeqIO   Ewan Birney
• [Bioperl-l] Using IO::Filter::gzip with Bio::SeqIO   Tony Cox
• [Bioperl-l] Using IO::Filter::gzip with Bio::SeqIO   Ewan Birney
• [Bioperl-l] validate_gff_via_ontology.pl   Chris Mungall
• [Bioperl-l] WARNING INCOMING: collection consolidation   Hilmar Lapp
• [Bioperl-l] WARNING INCOMING: collection consolidation   Paul Edlefsen
• [Bioperl-l] WARNING INCOMING: collection consolidation   Paul Edlefsen
• [Bioperl-l] WARNING INCOMING: collection consolidation   Hilmar Lapp
• [Bioperl-l] WARNING INCOMING: collection consolidation   Paul Edlefsen
• [Bioperl-l] WARNING INCOMING: collection consolidation   Paul Edlefsen
• [Bioperl-l] WARNING INCOMING: collection consolidation   Hilmar Lapp
• [Bioperl-l] WARNING INCOMING: collection consolidation   Ewan Birney
• [Bioperl-l] WARNING INCOMING: collection consolidation   Lincoln Stein
• [Bioperl-l] WARNING INCOMING: collection consolidation   Lincoln Stein
• [Bioperl-l] WARNING INCOMING: collection consolidation   Hilmar Lapp
• [Bioperl-l] where is Bio::Tools::Run::WrapperBase.pm?   Jason Stajich
• [Bioperl-l] where is Bio::Tools::Run::WrapperBase.pm?   Dan Kortschak
• [Bioperl-l] Where is bioperl-db for latest bioperl?   Gong Wuming
• [Bioperl-l] Where is the Latest Bioperl-db ?   Gong Wuming
• [Bioperl-l] Where is the Latest Bioperl-db ?   Hilmar Lapp
• [Bioperl-l] XML parsers   Hilmar Lapp
• [Bioperl-l] XML parsers   Hilmar Lapp
• [Bioperl-l] XML parsers   Robin Berjon
• [SO-devel] Re: [Bioperl-l] GFF3 preliminary   Lincoln Stein
• [SO-devel] Re: [Bioperl-l] GFF3 preliminary   Jim Kent
• [SO-devel] Re: [Bioperl-l] GFF3 preliminary   Richard Durbin

Last message date: Fri Feb 28 16:41:51 EDT 2003
Archived on: Fri Feb 28 19:33:03 EDT 2003

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