[Bioperl-l] bl2seq

[Jason Stajich]

What version of bioperl?  What operating system are you using?

Latest version of bioperl should work if you have bl2seq in your path.
But you'll have to make sure the BLASTDIR env variable is set so the
matricies can be found.

--jason

On Sat, 15 Feb 2003 andersen at purdue.edu wrote:

> Hello,
>
> I am not sure if this is the appropriate forum for my question, so if it is not,
> please route this question to where it will be.
>
> I am trying to use bl2seq to compare some sequences I have in text files.  I get
> one error stating cannot find path to bl2seq, which I attempted to correct by
> changing environment vars.  This did not work.  I changed a couple of other
> things and got by this step, but now my prog is getting some exceptions.  I am
> asking for help because I am more than 98% certain my code has no errors.
>
> I am a beginning perl programmer.  I need some help from someone who is familiar
> with bl2seq.  I will provide extensive details on demand.  Please email me
> directly on this, since I am subscribed to this list; it'll be easier to
> communicate that way.
>
> Regards,
> BDA
>
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu