[Bioperl-l] Remote BLAST and BLAST Word Size
Henrik Nilsson
henrik.nilsson at botany.gu.se
Sat Feb 15 15:39:46 EST 2003
Hello
I am under the understanding that increasing the BLAST Word length may
increase BLAST speed, and I'd like to play around with it so see what I
can get. Is it possible to set the word length in bioperl's remote
BLAST, something like
$Bio::Tools::Run::RemoteBlast::HEADER{'ENTREZ_QUERY'} = 'mouse[ORGN]
AND 17[WS]';
? Or are there any other non-GUI ways of achieving this?
Thanks,
Henrik N
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