[Bioperl-l] counting nucleotides in a sequence

parvesh at pacific.net.sg parvesh at pacific.net.sg
Wed Feb 19 07:49:58 EST 2003


Hello
I am interested in calculating the nucleotides A,C, G and T
in my sequence for every 10 nt window.
So I need to write a code that will scan the sequence for every 10 nts like 1-10,11-20.
preferably i can then stack the result in arrays and write this array to file.
Can someone help me to do this using bioperl code please ?
Thanks in advance for your help!

Best wishes
Parvesh



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