[Bioperl-l] local dialign module

[Mark Wagner]

> Mark - sounds great - we've abstrated the Clustalw implementation to be
> a bit more general so hopefully it looks more like what is in the current
> CVS for bioperl-run.  Specifically there is a base class that the obj
> inherits from Bio::Tools::Run::WrapperBase.  Let me know if you are
> confused or if you ended up writing things based on the old (1.0
> bioperl) implementation.
> 
> You can submit it as a feature request through http://bugzilla.bioperl.org
> and attatch the code as an attatchment.

Alas, I used the implementation from bioperl-run 1.1. The distribution
site for bioperl 1.2 only had that available. Looking at the FAQ I
see mention of WrapperBase. I missed that the first time. I'll take
a look at the cvs version bioperl-run and see if I can adapt.

-- 
Mark Wagner mark at lanfear.net