[Bioperl-l] Problems with my first Bioperl Script

Brian Carlson bcarlson at genetics.emory.edu
Wed Feb 26 13:00:28 EST 2003


Here's my script


#!/usr/bin/perl

use Bio::SearchIO;

my $searchio = new Bio::SearchIO ( -format => 'fasta',
                                   -file   => 't.fasta');
$i=1;

while ($result = $searchio->next_result)
{
  print "$i\n";
  $i++;
}


When I run this, I get:  unreognized FASTA Family report file

What could cause this?

FYI:
I'm trying to get fimilar with BioPerl.  What I'm moving towards
is the ability to enter a base-pair range, and get the sequence
from the fasta.  Simple stuff hopefully.

Thanks,
Brian



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