[Bioperl-l] Problems with my first Bioperl Script
Brian Carlson
bcarlson at genetics.emory.edu
Wed Feb 26 13:00:28 EST 2003
Here's my script
#!/usr/bin/perl
use Bio::SearchIO;
my $searchio = new Bio::SearchIO ( -format => 'fasta',
-file => 't.fasta');
$i=1;
while ($result = $searchio->next_result)
{
print "$i\n";
$i++;
}
When I run this, I get: unreognized FASTA Family report file
What could cause this?
FYI:
I'm trying to get fimilar with BioPerl. What I'm moving towards
is the ability to enter a base-pair range, and get the sequence
from the fasta. Simple stuff hopefully.
Thanks,
Brian
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