[Bioperl-l] Mlagan/lagan bioperl object

[Stephen Montgomery]

Roger that, it's the AlignIO since the output of mlagan and lagan is 
multi fasta.
No scoring metrics or anything like that yet as Mike et al. are still 
bug fixing certain elements (so it is just the basics).
Ewan - I'll send off a test driver.

Cheers,
Stephen



Shawn Hoon wrote:

>Oh I think Stephen already uses Bio::AlignIO::fasta as his parser,
>so no need for one.
>
>shawn
>
>On Sun, 2 Feb 2003, Ewan Birney wrote:
>
>>On Mon, 3 Feb 2003, Elia Stupka wrote:
>>
>>>>Aha. Can we separate out the wrapper to run and hte parser to core?
>>>>
>>>That's what we've done so far, I am sure that's what Shawn meant ;)
>>>
>>Cool. Probably we should give stephen a cvs a/c so he can develop/bug fix
>>directly. Stephen - is that ok by you?
>>
>>any detractors?
>>
>>
>>
>>>Elia
>>>
>>>********************************
>>>* http://www.fugu-sg.org/~elia *
>>>* tel:    +65 6874 1467        *
>>>* mobile: +65 9030 7613        *
>>>* fax:    +65 6779 1117        *
>>>********************************
>>>
>>>
>>>
>>-----------------------------------------------------------------
>>Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
>><birney at ebi.ac.uk>. 
>>-----------------------------------------------------------------
>>
>>_______________________________________________
>>Bioperl-l mailing list
>>Bioperl-l at bioperl.org
>>http://bioperl.org/mailman/listinfo/bioperl-l
>>
>


-- 
Stephen Montgomery
Genome Sciences Centre
Vancouver, BC Canada