[Bioperl-l] FASTA alignment encoding

[William R. Pearson]

I fear that Aaron has reversed the sense of our alignment encoding.  It is
in a prefix-, not postfix, notation:

 =26+9=15-2=9

would correspond to:

GT8.7  LGYWNVRGLTHPIRMLLEYTDSSYDEKRYTMGDAPDFDRSQWLNEKFKLG--LDFPNLPYL
       : :.. ::  . :: ::  .   ..:         .: ...   ::..    : : ..: .
XURT8C LYYFQGRGRMEVIRWLLATAGVEFEE---------EFLETREQYEKLQKDDCLLFGQVPLV

Bill Pearson