[Bioperl-l] Thanks and other questions

[Sally Li]

Thank you, Jason, Ewan and other friends in bioperl,

I just established Oracle 9i but I failed to use my
perl applications. Since I used mysql as my database
DBI is a good interface for the data communication of
mysql. I used JDBC for Oracle but never use Perl to
communicate with Oracle 9i. It is ok to run Oracle 8i
using my current perl scripts. But failed to  Oracle
9i. Is there any information related to this purpose? 
This may not be a good question in this list. Forgive
me!

Sally

--- Jason Stajich <jason at cgt.mc.duke.edu> wrote:
> If you output it in xml (-m 7 flag), Bio::SearchIO
> will parse it if you
> use the 'blastxml' format.
> 
> Plain-text blast output should just work with the
> 'blast' format and
> Bio::SearchIO.  I added a test for it in t/SearchIO
> and it should be fine.
> 
> -jason
> 
> On Mon, 10 Feb 2003, Sally Li wrote:
> 
> > Hi, Bioperl world,
> >
> > Using Bioperl makes the work much easier. When I
> check
> > tutorial, I don't see any information related to
> parse
> > the results RPS-BLAST (Reverse Position-Specific
> > Blast)that is a program which we can find the
> domain.
> >
> > Is there any module to deal with this or any plan
> to
> > build this module? If not , what is the closest
> module
> > to this kind of work? I would like to modified and
> it
> > and build a class for this work.
> >
> > Thank you.
> >
> > Sally
> >
> >
> >
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> >
> 
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu


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