[Bioperl-l] best way to map ESTs to genomic seq: blastn?

[Charles Hauser]

All,

I'd like to map a set of ESTs to genomic sequence and was planning to
just blastn EST vs genomic - I'd like to find the 'best' scaffold hit(s)
for each EST.

I am not sure how to pair HSPs for a given EST when they span an intron.

Is there a better methodology?

Chuck