[Bioperl-l] IO::String missing

[Jason Stajich]

It is in the bundle:

http://search.cpan.org/author/CRAFFI/Bundle-BioPerl-2.04/BioPerl.pm

-jason

On Thu, 6 Feb 2003, Prachi Shah wrote:

> Hi,
>
> That happens with Windows and Unix installations too.
> Bundle::BioPerl also does not install IO::String. You
> will have to install it separately.
>
> Prachi.
>
> --- nkuipers <nkuipers at uvic.ca> wrote:
> > Hello,
> >
> > I just downloaded the 1.2 distro.  I am not root,
> > therefore I used perl
> > MakeFile.PL LIB=/home/nkuipers/lib.  A number of
> > warnings were thrown during
> > make test, most having to do with the absence of
> > IO::String (a few others
> > regarding certain XML parsers and SOAP are of no
> > concern to me).
> >
> > A test script that contains only:
> >
> > use lib "/home/nkuipers/lib";
> > use Bio::Index::Blast;
> >
> > throws the warning:
> >
> > "Can't locate IO/String.pm in @INC (@INC
> > contains...) at
> > /home/nkuipers/lib/Bio/Index/Blast.pm line 87.
> >
> > Line 87 is "use IO::String;".
> >
> > In browsing the CPAN bioperl1.2 namespace and
> > www.bioperl.org I could not find
> > an IO::String module to install manually before
> > installing bioperl1.2.  Could
> > someone please tell me where I am being stupid?
> > Thanks.
> >
> > I am on Red Hat 8.0 using Perl 5.8.0.
> >
> > Cheers,
> >
> > Nathanael Kuipers
> > ---
> > Bioinformatics Technician
> > Center for Biomedical Research,
> > Dept. of Biology, University of Victoria
> > Victoria BC, Canada
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at bioperl.org
> > http://bioperl.org/mailman/listinfo/bioperl-l
>
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu