[Bioperl-l] [Bioperl-guts-l] any module (class) to run or parse the results of RPS-BLAST? (fwd)

[Jason Stajich]

Sally

It works if you just use Bio::SearchIO and the 'blast' format - you can
also do this if you use the 'blastxml' format and the XML output
format from blast (by specifying -m 7 ).

-jason
--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu

---------- Forwarded message ----------
Date: Mon, 10 Feb 2003 12:19:15 -0800 (PST)
From: Sally Li <sallyli97 at yahoo.com>
To: Ewan Birney <birney at ebi.ac.uk>, Frederic.Fleche at aventis.com
Cc: bioperl-guts-l at bioperl.org
Subject: [Bioperl-guts-l]  any module (class) to run or parse the results
    of RPS-BLAST?

Hi, Bioperl world,

Using Bioperl makes the work much easier. When I check
tutorial, I don't see any information related to parse
the results RPS-BLAST (Reverse Position-Specific
Blast)that is a program which we can find the domain.

Is there any module to deal with this or any plan to
build this module? If not , what is the closest module
to this kind of work? I would like to modified and it
and build a class for this work.

Thank you.

Sally



__________________________________________________
Do you Yahoo!?
Yahoo! Mail Plus - Powerful. Affordable. Sign up now.
http://mailplus.yahoo.com
_______________________________________________
Bioperl-guts-l mailing list
Bioperl-guts-l at bioperl.org
http://bioperl.org/mailman/listinfo/bioperl-guts-l