[Bioperl-l] plenty of tests fail on the main trunk

[Hilmar Lapp]

Failed Test           Stat Wstat Total Fail  Failed  List of Failed
------------------------------------------------------------------------ 
-------
t/BioGraphics.t                     17    1   5.88%  2
t/Exception.t            2   512     8    8 100.00%  1-8
t/LocusLink.t          255 65280    23   21  91.30%  3-23
t/PhylipDist.t         255 65280    18    0   0.00%  ??
t/PopGen.t               2   512    25    3  12.00%  23-25
t/SeqFeatCollection.t              428   ??       %  ??
t/flat.t                 2   512    13   13 100.00%  1-13

I am going to fix the failure in LocusLink.t, which is due to my local  
changes and shouldn't be visible to anyone else anyway. All others seem  
to be unrelated to what I'm hacking here:

t/BioGraphics................FAILED test 2
         Failed 1/17 tests, 94.12% okay

t/Exception..................Can't locate TestObject.pm in @INC (@INC  
contains: t ./scripts/exceptions . blib/arch blib/lib  
/System/Library/Perl/darwin /System/Library/Perl /sw/lib/perl5/darwin  
/sw/lib/perl5 /Library/Perl/darwin /Library/Perl  
/Network/Library/Perl/darwin /Network/Library/Perl) at t/Exception.t  
line 35.
BEGIN failed--compilation aborted at t/Exception.t line 35.
t/Exception..................dubious
         Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-8
         Failed 8/8 tests, 0.00% okay

(WTH is TestObject.pm??)

t/PhylipDist.................Can't locate object method "_parse" via  
package "Bio::Matrix::PhylipDist" at blib/lib/Bio/Matrix/PhylipDist.pm  
line 118.
t/PhylipDist.................dubious
         Test returned status 255 (wstat 65280, 0xff00)
         after all the subtests completed successfully

t/PopGen.....................NOK 25
------------- EXCEPTION  -------------
MSG: Could not open t/data/popgen_saureus.multidat for reading: No such  
file or directory
STACK Bio::Root::IO::_initialize_io Bio/Root/IO.pm:260
STACK Bio::Root::IO::new Bio/Root/IO.pm:206
STACK Bio::PopGen::IO::new Bio/PopGen/IO.pm:108
STACK Bio::PopGen::IO::new Bio/PopGen/IO.pm:121
STACK toplevel t/PopGen.t:150

--------------------------------------
t/PopGen.....................dubious
         Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 23-25
         Failed 3/25 tests, 88.00% okay

(someone forgot to commit a file??)

t/SeqFeatCollection..........ok 432/428Don't know which tests failed:  
got 432 ok, expected 428

t/flat.......................
------------- EXCEPTION  -------------
MSG: Please supply a -dbname argument
STACK Bio::DB::Flat::new blib/lib/Bio/DB/Flat.pm:135
STACK toplevel t/flat.t:61

--------------------------------------
t/flat.......................dubious
         Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-13
         Failed 13/13 tests, 0.00% okay

We've once had the rule that you only commit once tests pass, or you  
make an announcement on the list with good reasons why those tests are  
going to fail. Otherwise you owe beer. I don't know who's going to  
drink all that beer in Brisbane that accumulated over the last couple  
days, let alone who's going to buy it ...

	-hilmar
-- 
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
-------------------------------------------------------------