[Bioperl-l] Re: [SO-devel] GFF3 preliminary

Michael Ashburner (Genetics) ma11 at gen.cam.ac.uk
Thu Feb 20 09:42:25 EST 2003


I thought this was going to be SO/SOFA compliant ?  If so, then 


five_prime_untranslated_region ; SO:0000204 ; SOFA:SOFA ; synonym:5'-UTR
three_prime_untranslated_region ; SO:0000205 ; SOFA:SOFA ; synonym:3'-UTR


also this is not true in so/soda
	splice_donor
	splice_acceptor
these are childs of primary_transcript, since neither appear in the mRNA
per se.

Michael


More information about the Bioperl-l mailing list