[Bioperl-l] bpindex/bpfetch work for me:

[Wiepert, Mathieu]

Hi,

I have this same problem...  I have no idea if this helps, but I traced it to the open_dbm method, somewhere around line 400, where self is blessed as a Bio::Index::Genbank object, which has not _type_and_version?  I see Bio::Index::Genbank isa AbstractSeq.  Not sure why Fasta works yet, hadn't had time to test it out...
  
   if( ref($self) eq "Bio::Index::Abstract" ) { 
	my $pkg = $self->_code_base();
	bless $self, $pkg;
    }

    # Check or set this is the right kind and version of index
    $self->_type_and_version();
  
Probably barking up the wrong tree anyway, but there it is.

-Mat

-----Original Message-----
From: Ewan Birney [mailto:birney at ebi.ac.uk]
Sent: Tuesday, February 25, 2003 9:47 AM
To: Brian Osborne
Cc: bioperl-l at bioperl.org
Subject: RE: [Bioperl-l] bpindex/bpfetch work for me:



Ha! I never use GenBank. I will see if I can replicate this over here.



-----------------------------------------------------------------
Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
<birney at ebi.ac.uk>. 
-----------------------------------------------------------------

_______________________________________________
Bioperl-l mailing list
Bioperl-l at bioperl.org
http://bioperl.org/mailman/listinfo/bioperl-l