[Bioperl-l] StandAlone BLAST error

[Tobias Thierer]

Hi,

> I am trying to blast sequences from a COG against a single sequence in a
> loop. After successfully blasting about 10 sequences, I get the following
> error. Can anybody throw some light on this ? Thanks in advance for any
> comments.

This was a known bug in bl2seq in which I have also run once: the parser
throws an exception when there is no hit, in contrast to returning 0 as
stated in the documentation), but I think I remember that this bug was
fixed recently. Do you have the newest version of BioPerl (at least v1.2)?

    Tobias