[Bioperl-l] predicting secondary structure

[Richard Adams]

Hi Nigam,
    I assume you mean you want to predict the secondary structure of the
protein encoded by the
    cDNA?

    I have some scripts which will take a protein sequence, get remote
SOPMA, GOR4 and HNN predictions,
    parse the results and produce Bio::SeqFeature objects for each
secondary structure element (
    which can then for example, be used to annotate the sequence file
and be displayed graphically
    via Bio::Graphics.
    At the moment these are just standalone programs but it's my
intention to make classes out of them for possible BioPerl
incorporation, if people think it's interesting.
        Let me know if you want the scripts and I can contact you off
list re how to use them.

Cheers Richard

Dr Richard Adams
University of Edinburgh
UK