[Bioperl-l] SeqIO; writing to custom out format?

[Hilmar Lapp]

On Monday, February 24, 2003, at 05:33  AM, Brian Osborne wrote:

> Postgres, yes! I'm pleading ignorance of the details but a lot of work 
> has
> gone into biosql, chado, and bioperl-db over the last few weeks, you 
> should
> take a look at the latest bioperl-db,

Note that the latest bioperl-db won't work yet. To use the schema as it 
was before the Singapore changes, checkout branches 
before-singapore-change from both biosql-schema and bioperl-db. To use 
the schema that is to be released with bioperl-db you'll have to wait a 
few more days.

>  you will find postgres compatibility I
> believe.

There is still an outstanding issue with Pg support in bioperl-db which 
I'll write up together with solution alternatives as I see them in 
order to get a consensus vote on how to proceed. Will come during the 
next days.

	-hilmar

-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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