[Bioperl-l] problem with bioperl on UNIX

[Prachi Shah]

I am sorry, this might be silly......but what
initialization should I add "-verbose=>1" ?

--- Jason Stajich <jason at cgt.mc.duke.edu> wrote:
> add -verbose => 1
> to your initialization.
> 
> 
> On Thu, 6 Feb 2003, Prachi Shah wrote:
> 
> > Hmmm....
> > Well, it never works for me. Is there a way to
> view
> > detailed error/rejection message received from
> > GenBank? That might give a better idea of what is
> > actually happening. All the error that I see right
> now
> > tells me that for some reason no results were
> > returned. But, knowing that reason might really
> help.
> >
> > thanks,
> > Prachi.
> >
> >
> > --- Jason Stajich <jason at cgt.mc.duke.edu> wrote:
> > > It is possible genbank is/was rejecting queries
> - I
> > > am able to execute
> > > your query on a linux box.  I had trouble
> yesterday
> > > trying to run your
> > > code though.  It is possible that GenBank was
> having
> > > problems when you
> > > last tried to execute your code.
> > >
> > > #!/usr/bin/perl -w
> > > use strict;
> > > use Bio::DB::Query::GenBank;
> > >
> > > my $query_string = 'Gallus gallus[organism]';
> > >
> > > my $query = Bio::DB::Query::GenBank->new(-db  
> =>
> > > 'protein',
> > > 				      -query=>$query_string);
> > > my $count = $query->count;
> > > print "COUNT is $count\n";
> > >
> > > I get:
> > >
> > > COUNT is 7742
> > >
> > >
> > > -jason
> > >
> >
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> 
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu


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